I/O error ............... exit_flag: 4 in SHOREFACE case

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togye176

I/O error ............... exit_flag: 4 in SHOREFACE case

#1 Unread post by togye176 »

Dear Members,

Doss the shoreface case in ROMS application run well?
I can't run that case without any modification.

Code: Select all

 CHECK_MULTIFILE - Error while checking input Forcing file:
                   Data/swan_shoreface_angle_forc.nc
                   last data time record available is for day:     0 00:00:00
                   but data is needed to finish run until day:     0 06:00:00
It seems that the input files has problem. Do I have to create the forcing file to run the sample case?

Code: Select all

Adding dependency `intel/2011-8.273-64bit` to your environment
Adding package `openmpi/1.4.4-intel64` to your environment
GridEngine parameters:
  mpirun        = /opt/shared/openmpi/1.4.4-intel64/bin/mpirun
  nhosts        = 1
  nproc         = 2
  executable    = ./oceanM ocean_shoreface.in
  MPI flags     = --display-map --mca btl ^openib --mca oob_tcp_if_exclude lo,ib0 --mca btl_tcp_if_exclude lo,ib0 --mca mtl ^psm

-- begin OPENMPI run --

 ========================   JOB MAP   ========================

 Data for node: Name: n006	Num procs: 2
 	Process OMPI jobid: [29149,1] Process rank: 0
 	Process OMPI jobid: [29149,1] Process rank: 1

 =============================================================

 Model Input Parameters:  ROMS/TOMS version 3.7  
                          Saturday - May 17, 2014 -  9:19:54 AM
 -----------------------------------------------------------------------------

 Shore Face Planar Beach Test Case

 Operating system : Linux
 CPU/hardware     : x86_64
 Compiler system  : ifort
 Compiler command : /opt/shared/openmpi/1.4.4-intel64/bin/mpif90
 Compiler flags   : -heap-arrays -fp-model precise -ip -O3 -free -free -free

 Input Script  : 

 SVN Root URL  : https://www.myroms.org/svn/src/trunk
 SVN Revision  : 735M

 Local Root    : /lustre/work/kirby/jung/MyDir2
 Header Dir    : /lustre/work/kirby/jung/work/ROM/work1/shoreface
 Header file   : shoreface.h
 Analytical Dir: /lustre/work/kirby/jung/work/ROM/work1/shoreface

 Resolution, Grid 01: 0059x0007x020,  Parallel Nodes:   2,  Tiling: 002x001


 Physical Parameters, Grid: 01
 =============================

       4320  ntimes            Number of timesteps for 3-D equations.
      5.000  dt                Timestep size (s) for 3-D equations.
         20  ndtfast           Number of timesteps for 2-D equations between
                                 each 3D timestep.
          1  ERstr             Starting ensemble/perturbation run number.
          1  ERend             Ending ensemble/perturbation run number.
          0  nrrec             Number of restart records to read from disk.
          T  LcycleRST         Switch to recycle time-records in restart file.
        720  nRST              Number of timesteps between the writing of data
                                 into restart fields.
          1  ninfo             Number of timesteps between print of information
                                 to standard output.
          1  nSTA              Number of timesteps between the writing of data
                                 the stations file.
          T  ldefout           Switch to create a new output NetCDF file(s).
        360  nHIS              Number of timesteps between the writing fields
                                 into history file.
          1  ntsAVG            Starting timestep for the accumulation of output
                                 time-averaged data.
        720  nAVG              Number of timesteps between the writing of
                                 time-averaged data into averages file.
 0.0000E+00  nl_visc2          NLM Horizontal, harmonic mixing coefficient
                                 (m2/s) for momentum.
          F  LuvSponge         Turning OFF sponge on horizontal momentum.
          F  LtracerSponge(01) Turning OFF sponge on tracer 01: temp
          F  LtracerSponge(02) Turning OFF sponge on tracer 02: salt
 5.0000E-06  Akt_bak(01)       Background vertical mixing coefficient (m2/s)
                                 for tracer 01: temp
 5.0000E-06  Akt_bak(02)       Background vertical mixing coefficient (m2/s)
                                 for tracer 02: salt
 5.0000E-05  Akv_bak           Background vertical mixing coefficient (m2/s)
                                 for momentum.
 5.0000E-06  Akk_bak           Background vertical mixing coefficient (m2/s)
                                 for turbulent energy.
 5.0000E-06  Akp_bak           Background vertical mixing coefficient (m2/s)
                                 for turbulent generic statistical field.
 3.0000E-04  rdrg              Linear bottom drag coefficient (m/s).
 1.5000E-03  rdrg2             Quadratic bottom drag coefficient.
 1.5000E-02  Zob               Bottom roughness (m).
 1.0000E-01  Dcrit             Minimum depth for wetting and drying (m).
          1  Vtransform        S-coordinate transformation equation.
          1  Vstretching       S-coordinate stretching function.
 0.0000E+00  theta_s           S-coordinate surface control parameter.
 0.0000E+00  theta_b           S-coordinate bottom  control parameter.
      0.000  Tcline            S-coordinate surface/bottom layer width (m) used
                                 in vertical coordinate stretching.
   1025.000  rho0              Mean density (kg/m3) for Boussinesq approximation.
      0.000  dstart            Time-stamp assigned to model initialization (days).
       0.00  time_ref          Reference time for units attribute (yyyymmdd.dd)
 0.0000E+00  Tnudg(01)         Nudging/relaxation time scale (days)
                                 for tracer 01: temp
 0.0000E+00  Tnudg(02)         Nudging/relaxation time scale (days)
                                 for tracer 02: salt
 0.0000E+00  Znudg             Nudging/relaxation time scale (days)
                                 for free-surface.
 0.0000E+00  M2nudg            Nudging/relaxation time scale (days)
                                 for 2D momentum.
 0.0000E+00  M3nudg            Nudging/relaxation time scale (days)
                                 for 3D momentum.
 0.0000E+00  obcfac            Factor between passive and active
                                 open boundary conditions.
          F  VolCons(1)        NLM western  edge boundary volume conservation.
          F  VolCons(2)        NLM southern edge boundary volume conservation.
          F  VolCons(3)        NLM eastern  edge boundary volume conservation.
          F  VolCons(4)        NLM northern edge boundary volume conservation.
     10.000  T0                Background potential temperature (C) constant.
     30.000  S0                Background salinity (PSU) constant.
   1027.000  R0                Background density (kg/m3) used in linear Equation
                                 of State.
 1.7000E-04  Tcoef             Thermal expansion coefficient (1/Celsius).
 7.6000E-04  Scoef             Saline contraction coefficient (1/PSU).
      1.000  gamma2            Slipperiness variable: free-slip (1.0) or 
                                                      no-slip (-1.0).
          F  LuvSrc            Turning OFF momentum point Sources/Sinks.
          F  LwSrc             Turning OFF volume influx point Sources/Sinks.
          F  LtracerSrc(01)    Turning OFF point Sources/Sinks on tracer 01: temp
          F  LtracerSrc(02)    Turning OFF point Sources/Sinks on tracer 02: salt
          F  LsshCLM           Turning OFF processing of SSH climatology.
          F  Lm2CLM            Turning OFF processing of 2D momentum climatology.
          F  Lm3CLM            Turning OFF processing of 3D momentum climatology.
          F  LtracerCLM(01)    Turning OFF processing of climatology tracer 01: temp
          F  LtracerCLM(02)    Turning OFF processing of climatology tracer 02: salt
          F  LnudgeM2CLM       Turning OFF nudging of 2D momentum climatology.
          F  LnudgeM3CLM       Turning OFF nudging of 3D momentum climatology.
          F  LnudgeTCLM(01)    Turning OFF nudging of climatology tracer 01: temp
          F  LnudgeTCLM(02)    Turning OFF nudging of climatology tracer 02: salt
          T  Hout(idFsur)      Write out free-surface.
          T  Hout(idUbar)      Write out 2D U-momentum component.
          T  Hout(idVbar)      Write out 2D V-momentum component.
          T  Hout(idUvel)      Write out 3D U-momentum component.
          T  Hout(idVvel)      Write out 3D V-momentum component.
          T  Hout(idWvel)      Write out W-momentum component.
          T  Hout(idOvel)      Write out omega vertical velocity.
          T  Hout(idTvar)      Write out tracer 01: temp
          T  Hout(idTvar)      Write out tracer 02: salt
          T  Hout(idUbms)      Write out bottom U-momentum stress.
          T  Hout(idVbms)      Write out bottom V-momentum stress.
          T  Hout(idW2xx)      Write out 2D radiation stress, Sxx.
          T  Hout(idW2xy)      Write out 2D radiation stress, Sxy.
          T  Hout(idW2yy)      Write out 2D radiation stress, Syy.
          T  Hout(idU2rs)      Write out total 2D u-radiation stress.
          T  Hout(idV2rs)      Write out total 2D v-radiation stress.
          T  Hout(idU2Sd)      Write out 2D u-momentum stokes velocity.
          T  Hout(idV2Sd)      Write out 2D v-momentum stokes velocity.
          T  Hout(idW3xx)      Write out 3D radiation stress, Sxx.
          T  Hout(idW3xy)      Write out 3D radiation stress, Sxy.
          T  Hout(idW3yy)      Write out 3D radiation stress, Syy.
          T  Hout(idW3zx)      Write out 3D radiation stress, Szx.
          T  Hout(idW3zy)      Write out 3D radiation stress, Szy.
          T  Hout(idU3rs)      Write out total 3D u-radiation stress.
          T  Hout(idV3rs)      Write out total 3D v-radiation stress.
          T  Hout(idU3Sd)      Write out 3D u-momentum stokes velocity.
          T  Hout(idV3Sd)      Write out 3D v-momentum stokes velocity.
          T  Hout(idWamp)      Write out wave height.
          T  Hout(idWlen)      Write out wavelength.
          T  Hout(idWdir)      Write out wave direction.
          T  Hout(idBott)      Write out bottom property 01: grain_diameter
          T  Hout(idBott)      Write out bottom property 02: grain_density
          T  Hout(idBott)      Write out bottom property 03: settling_vel
          T  Hout(idBott)      Write out bottom property 04: erosion_stress
          T  Hout(idBott)      Write out bottom property 05: ripple_length
          T  Hout(idBott)      Write out bottom property 06: ripple_height
          T  Hout(idBott)      Write out bottom property 07: bed_wave_amp
          T  Hout(idBott)      Write out bottom property 08: Zo_def
          T  Hout(idBott)      Write out bottom property 09: Zo_app
          T  Hout(idBott)      Write out bottom property 15: active_layer_thickness
          T  Hout(idVvis)      Write out vertical viscosity: AKv.
          T  Hout(idMtke)      Write out turbulent kinetic energy.
          T  Hout(idMtls)      Write out turbulent generic length-scale.

          T  Aout(idFsur)      Write out averaged free-surface.
          T  Aout(idUbar)      Write out averaged 2D U-momentum component.
          T  Aout(idVbar)      Write out averaged 2D V-momentum component.
          T  Aout(idUvel)      Write out averaged 3D U-momentum component.
          T  Aout(idVvel)      Write out averaged 3D V-momentum component.
          T  Aout(idWvel)      Write out averaged W-momentum component.
          T  Aout(idOvel)      Write out averaged omega vertical velocity.
          T  Aout(idTvar)      Write out averaged tracer 01: temp
          T  Aout(idTvar)      Write out averaged tracer 02: salt
          T  Aout(idUsms)      Write out averaged surface U-momentum stress.
          T  Aout(idVsms)      Write out averaged surface V-momentum stress.
          T  Aout(idUbms)      Write out averaged bottom U-momentum stress.
          T  Aout(idVbms)      Write out averaged bottom V-momentum stress.
          T  Aout(idW2xx)      Write out averaged 2D radiation stress, Sxx.
          T  Aout(idW2xy)      Write out averaged 2D radiation stress, Sxy.
          T  Aout(idW2yy)      Write out averaged 2D radiation stress, Syy.
          T  Aout(idU2rs)      Write out averaged total 2D u-radiation stress.
          T  Aout(idV2rs)      Write out averaged total 2D v-radiation stress.
          T  Aout(idU2Sd)      Write out averaged 2D u-momentum stokes velocity.
          T  Aout(idV2Sd)      Write out averaged 2D v-momentum stokes velocity.
          T  Aout(idW3xx)      Write out averaged 3D radiation stress, Sxx.
          T  Aout(idW3xy)      Write out averaged 3D radiation stress, Sxy.
          T  Aout(idW3yy)      Write out averaged 3D radiation stress, Syy.
          T  Aout(idW3zx)      Write out averaged 3D radiation stress, Szx.
          T  Aout(idW3zy)      Write out averaged 3D radiation stress, Szy.
          T  Aout(idU3rs)      Write out averaged total 3D u-radiation stress.
          T  Aout(idV3rs)      Write out averaged total 3D v-radiation stress.
          T  Aout(idU3Sd)      Write out averaged 3D u-momentum stokes velocity.
          T  Aout(idV3Sd)      Write out averaged 3D v-momentum stokes velocity.
          T  Aout(idVvis)      Write out averaged vertical viscosity: AKv.
          T  Aout(idTdif)      Write out averaged vertical diffusion: AKt(itemp).
          T  Aout(idSdif)      Write out averaged vertical diffusion: AKt(isalt).

 Output/Input Files:

             Output Restart File:  ocean_rst.nc
             Output History File:  ocean_his.nc
            Output Averages File:  ocean_avg.nc
            Output Stations File:  ocean_sta.nc
           Input Forcing File 01:  Data/swan_shoreface_angle_forc.nc
          Station positions File:  stations.in

 Tile partition information for Grid 01:  0059x0007x0020  tiling: 002x001

     tile     Istr     Iend     Jstr     Jend     Npts

        0        1       30        1        7     4200
        1       31       59        1        7     4060

 Tile minimum and maximum fractional coordinates for Grid 01:
   (interior points only)

     tile     Xmin     Xmax     Ymin     Ymax     grid

        0     0.50    30.50     0.50     7.50  RHO-points
        1    30.50    59.50     0.50     7.50  RHO-points

        0     1.00    30.50     0.50     7.50    U-points
        1    30.50    59.00     0.50     7.50    U-points

        0     0.50    30.50     1.00     7.00    V-points
        1    30.50    59.50     1.00     7.00    V-points

 Maximum halo size in XI and ETA directions:

               HaloSizeI(1) =     168
               HaloSizeJ(1) =      88
                TileSide(1) =      36
                TileSize(1) =     576



 Sediment Parameters, Grid: 01
 =============================


 Size     Sd50        Csed        Srho        Wsed        Erate       poros
 Class    (mm)       (kg/m3)     (kg/m3)     (mm/s)     (kg/m2/s)    (nondim)

   1    1.0000E+00  0.0000E+00  2.6500E+03  1.0000E+00  1.0000E-05  5.0000E-01

         tau_ce      tau_cd      nl_tnu2     nl_tnu4     Akt_bak      Tnudg
         (N/m2)      (N/m2)      (m2/s)      (m4/s)       (m2/s)      (day)

   1    7.0000E-02  2.0000E-02  0.0000E+00  0.0000E+00  5.0000E-06  0.0000E+00

         morph_fac
         (nondim)

   1    1.0000E+00

 New bed layer formed when deposition exceeds  0.1000E-01 (m).
 Two first layers are combined when 2nd layer smaller than  0.0000E+00 (m).
 Rate coefficient for bed load transport =  0.5000E-01

          F  LtracerSponge(03Turning OFF sponge on tracer 03: sand_01
          F  LtracerSrc(03)  Turning OFF point sources/Sink on tracer 03: sand_01
          F  LtracerCLM(03)  Turning OFF processing of climatology tracer 03: sand_01
          F  LnudgeTCLM(03)  Turning OFF nudging of climatology tracer 03: sand_01
          T  Hout(idTvar)   Write out sediment01: sand_01
          T  Hout(idfrac)   Write out bed fraction, sediment 01: sandfrac_01
          T  Hout(idfrac)   Write out mass, sediment 01: sandmass_01
          T  Hout(idUbld)   Write out U-bedload, sediment 01: bedload_Usand_01
          T  Hout(idVbld)   Write out V-bedload, sediment 01: bedload_Vsand_01
          T  Hout(idSbed)   Write out BED property 01: bed_thickness
          T  Hout(idSbed)   Write out BED property 02: bed_age
          T  Hout(idSbed)   Write out BED property 03: bed_porosity

          T  Aout(idTvar)   Write out averaged sediment01: sand_01
          T  Aout(idUbld)   Write out U-bedload, sediment 01: bedload_Usand_01
          T  Aout(idVbld)   Write out V-bedload, sediment 01: bedload_Vsand_01


 Stations Parameters, Grid: 01
 =============================

          1  Nstation        Number of stations to write out into stations file.
          T  Sout(idFsur)    Write out free-surface.
          T  Sout(idUbar)    Write out 2D U-momentum component.
          T  Sout(idVbar)    Write out 2D V-momentum component.
          T  Sout(idUvel)    Write out 3D U-momentum component.
          T  Sout(idVvel)    Write out 3D V-momentum component.
          T  Sout(idWvel)    Write out W-momentum component.
          T  Sout(idOvel)    Write out omega vertical velocity.
          T  Sout(idTvar)    Write out tracer 01: temp
          T  Sout(idTvar)    Write out tracer 02: salt
          T  Sout(idTvar)    Write out tracer 03: sand_01
          T  Sout(idUsms)    Write out surface U-momentum stress.
          T  Sout(idVsms)    Write out surface V-momentum stress.
          T  Sout(idUbms)    Write out bottom U-momentum stress.
          T  Sout(idVbms)    Write out bottom V-momentum stress.
          T  Sout(idW2xx)    Write out 2D radiation stress, Sxx.
          T  Sout(idW2xy)    Write out 2D radiation stress, Sxy.
          T  Sout(idW2yy)    Write out 2D radiation stress, Syy.
          T  Sout(idU2rs)    Write out total 2D u-radiation stress.
          T  Sout(idV2rs)    Write out total 2D v-radiation stress.
          T  Sout(idU2Sd)    Write out 2D u-momentum stokes velocity.
          T  Sout(idV2Sd)    Write out 2D v-momentum stokes velocity.
          T  Sout(idW3xx)    Write out 3D horizonrtal radiation stress, Sxx.
          T  Sout(idW3xy)    Write out 3D horizonrtal radiation stress, Sxy.
          T  Sout(idW3yy)    Write out 3D horizonrtal radiation stress, Syy.
          T  Sout(idW3zx)    Write out 3D vertical radiation stress, Spx.
          T  Sout(idW3zy)    Write out 3D vertical radiation stress, Spy.
          T  Sout(idU3rs)    Write out total 3D u-radiation stress.
          T  Sout(idV3rs)    Write out total 3D v-radiation stress.
          T  Sout(idU3Sd)    Write out 3D u-momentum stokes velocity.
          T  Sout(idV3Sd)    Write out 3D v-momentum stokes velocity.
          T  Sout(idWamp)    Write out wave height.
          T  Sout(idWlen)    Write out wave length.
          T  Sout(idWdir)    Write out wave direction.
          T  Sout(idBott)    Write out bottom property 03: settling_vel
          T  Sout(idBott)    Write out bottom property 04: erosion_stress
          T  Sout(idBott)    Write out bottom property 05: ripple_length
          T  Sout(idBott)    Write out bottom property 06: ripple_height
          T  Sout(idBott)    Write out bottom property 07: bed_wave_amp
          T  Sout(idBott)    Write out bottom property 08: Zo_def
          T  Sout(idBott)    Write out bottom property 09: Zo_app
          T  Sout(idBott)    Write out bottom property 12: Zo_bedform
          T  Sout(idBott)    Write out bottom property 13: Zo_bedload
          T  Sout(idBott)    Write out bottom property 14: Zo_wbl
          T  Sout(idBott)    Write out bottom property 15: active_layer_thickness
          T  Sout(idBott)    Write out bottom property 16: saltation
          T  Sout(idBott)    Write out bottom property 17: ero_flux
          T  Sout(idBott)    Write out bottom property 18: dep_net
          T  Sout(idDano)    Write out density anomaly.
          T  Sout(idVvis)    Write out vertical viscosity coefficient.
          T  Sout(idTdif)    Write out vertical T-diffusion coefficient.
          T  Sout(idSdif)    Write out vertical S-diffusion coefficient.
 
             Flag and positions for station 0001:  0    25.0000    3.0000

 Lateral Boundary Conditions: NLM
 ============================

 Variable               Grid  West Edge    South Edge   East Edge    North Edge
 ---------              ----  ----------   ----------   ----------   ----------

 zeta                     1   Chapman Imp  Periodic     Closed       Periodic

 ubar                     1   Flather      Periodic     Closed       Periodic

 vbar                     1   Flather      Periodic     Closed       Periodic

 u                        1   Gradient     Periodic     Closed       Periodic

 v                        1   Gradient     Periodic     Closed       Periodic

 temp                     1   Gradient     Periodic     Closed       Periodic

 salt                     1   Gradient     Periodic     Closed       Periodic

 sand_01                  1   Gradient     Periodic     Closed       Periodic

 tke                      1   Gradient     Periodic     Closed       Periodic

 Activated C-preprocessing Options:

 SHOREFACE           Shore Face Planar Beach Test Case
 ANA_BPFLUX          Analytical bottom passive tracers fluxes.
 ANA_BSFLUX          Analytical kinematic bottom salinity flux.
 ANA_BTFLUX          Analytical kinematic bottom temperature flux.
 ANA_FSOBC           Analytical free-surface boundary conditions.
 ANA_GRID            Analytical grid set-up.
 ANA_INITIAL         Analytical initial conditions.
 ANA_M2OBC           Analytical 2D momentum boundary conditions.
 ANA_MASK            Analytical Land/Sea Masking.
 ANA_SEDIMENT        Analytical sediment initial conditions.
 ANA_SMFLUX          Analytical kinematic surface momentum flux.
 ANA_SPFLUX          Analytical surface passive tracer fluxes.
 ANA_SSFLUX          Analytical kinematic surface salinity flux.
 ANA_STFLUX          Analytical kinematic surface temperature flux.
 ASSUMED_SHAPE       Using assumed-shape arrays.
 AVERAGES            Writing out time-averaged nonlinear model fields.
 BEDLOAD_MPM         Activate bed load sediment transport Meyer-Peter-Mueller.
 DJ_GRADPS           Parabolic Splines density Jacobian (Shchepetkin, 2002).
 DOUBLE_PRECISION    Double precision arithmetic.
 MASKING             Land/Sea masking.
 MIX_S_UV            Mixing of momentum along constant S-surfaces.
 MPI                 MPI distributed-memory configuration.
 MY25_MIXING         Mellor/Yamada Level-2.5 mixing closure.
 NEARSHORE_MELLOR05  Nearshore Radiation Stress Terms (Mellor 2005).
 NONLINEAR           Nonlinear Model.
 !NONLIN_EOS         Linear Equation of State for seawater.
 POWER_LAW           Power-law shape time-averaging barotropic filter.
 PROFILE             Time profiling activated .
 K_GSCHEME           Third-order upstream advection of TKE fields.
 !RST_SINGLE         Double precision fields in restart NetCDF file.
 SALINITY            Using salinity.
 SEDIMENT            Cohesive and noncohesive sediments.
 SUSPLOAD            Activate suspended sediment transport.
 SOLVE3D             Solving 3D Primitive Equations.
 SPLINES             Conservative parabolic spline reconstruction.
 STATIONS            Writing out station data.
 TS_MPDATA           Recursive flux corrected MPDATA 3D advection of tracers.
 UV_ADV              Advection of momentum.
 UV_U3HADVECTION     Third-order upstream horizontal advection of 3D momentum.
 UV_C4VADVECTION     Fourth-order centered vertical advection of momentum.
 UV_QDRAG            Quadratic bottom stress.
 UV_VIS2             Harmonic mixing of momentum.
 VAR_RHO_2D          Variable density barotropic mode.
 WET_DRY             Wetting and drying activated.
 Node #  1 (pid=   27651) is active.

 Process Information:

 Node #  0 (pid=   27650) is active.

 INITIAL: Configuring and initializing forward nonlinear model ...
 *******

 Vertical S-coordinate System, Grid 01:

 level   S-coord     Cs-curve   Z   at hmin       at hc    half way     at hmax

    20   0.0000000   0.0000000        0.000       0.000       0.000       0.000
    19  -0.0500000  -0.0500000        0.150       0.000      -0.219      -0.588
    18  -0.1000000  -0.1000000        0.300       0.000      -0.438      -1.175
    17  -0.1500000  -0.1500000        0.450       0.000      -0.656      -1.763
    16  -0.2000000  -0.2000000        0.600       0.000      -0.875      -2.350
    15  -0.2500000  -0.2500000        0.750       0.000      -1.094      -2.938
    14  -0.3000000  -0.3000000        0.900       0.000      -1.313      -3.525
    13  -0.3500000  -0.3500000        1.050       0.000      -1.531      -4.113
    12  -0.4000000  -0.4000000        1.200       0.000      -1.750      -4.700
    11  -0.4500000  -0.4500000        1.350       0.000      -1.969      -5.288
    10  -0.5000000  -0.5000000        1.500       0.000      -2.188      -5.875
     9  -0.5500000  -0.5500000        1.650       0.000      -2.406      -6.463
     8  -0.6000000  -0.6000000        1.800       0.000      -2.625      -7.050
     7  -0.6500000  -0.6500000        1.950       0.000      -2.844      -7.638
     6  -0.7000000  -0.7000000        2.100       0.000      -3.063      -8.225
     5  -0.7500000  -0.7500000        2.250       0.000      -3.281      -8.812
     4  -0.8000000  -0.8000000        2.400       0.000      -3.500      -9.400
     3  -0.8500000  -0.8500000        2.550       0.000      -3.719      -9.988
     2  -0.9000000  -0.9000000        2.700       0.000      -3.938     -10.575
     1  -0.9500000  -0.9500000        2.850       0.000      -4.156     -11.163
     0  -1.0000000  -1.0000000        3.000       0.000      -4.375     -11.750

 Time Splitting Weights for Grid 01:    ndtfast =  20    nfast =  29
 ==================================

    Primary            Secondary            Accumulated to Current Step

  1-0.0009651193358779 0.0500000000000000-0.0009651193358779 0.0500000000000000
  2-0.0013488780126037 0.0500482559667939-0.0023139973484816 0.1000482559667939
  3-0.0011514592651645 0.0501156998674241-0.0034654566136460 0.1501639558342179
  4-0.0003735756740661 0.0501732728306823-0.0038390322877122 0.2003372286649002
  5 0.0009829200513762 0.0501919516143856-0.0028561122363360 0.2505291802792858
  6 0.0029141799764308 0.0501428056118168 0.0000580677400948 0.3006719858911026
  7 0.0054132615310267 0.0499970966129952 0.0054713292711215 0.3506690825040978
  8 0.0084687837865132 0.0497264335364439 0.0139401130576347 0.4003955160405417
  9 0.0120633394191050 0.0493029943471183 0.0260034524767397 0.4496985103876600
 10 0.0161716623600090 0.0486998273761630 0.0421751148367486 0.4983983377638230
 11 0.0207585511322367 0.0478912442581626 0.0629336659689853 0.5462895820219856
 12 0.0257765478740990 0.0468533167015507 0.0887102138430843 0.5931428987235363
 13 0.0311633730493853 0.0455644893078458 0.1198735868924696 0.6387073880313821
 14 0.0368391158442262 0.0440063206553765 0.1567127027366958 0.6827137086867585
 15 0.0427031802506397 0.0421643648631652 0.1994158829873354 0.7248780735499237
 16 0.0486309868367616 0.0400292058506332 0.2480468698240970 0.7649072794005569
 17 0.0544704302037591 0.0375976565087951 0.3025173000278562 0.8025049359093520
 18 0.0600380921294285 0.0348741349986072 0.3625553921572847 0.8373790709079592
 19 0.0651152103984763 0.0318722303921358 0.4276706025557610 0.8692513013000949
 20 0.0694434033194839 0.0286164698722119 0.4971140058752449 0.8978677711723068
 21 0.0727201499285569 0.0251442997062377 0.5698341558038018 0.9230120708785445
 22 0.0745940258796570 0.0215082922098099 0.6444281816834588 0.9445203630883544
 23 0.0746596950216180 0.0177785909158270 0.7190878767050768 0.9622989540041814
 24 0.0724526566618460 0.0140456061647461 0.7915405333669228 0.9763445601689276
 25 0.0674437485167025 0.0104229733316538 0.8589842818836253 0.9867675335005814
 26 0.0590334053485720 0.0070507859058187 0.9180176872321973 0.9938183194064002
 27 0.0465456732896125 0.0040991156383901 0.9645633605218099 0.9979174350447904
 28 0.0292219798521905 0.0017718319739095 0.9937853403740005 0.9996892670186999
 29 0.0062146596259994 0.0003107329813000 0.9999999999999999 0.9999999999999999

 ndtfast, nfast =   20  29   nfast/ndtfast =  1.45000

 Centers of gravity and integrals (values must be 1, 1, approx 1/2, 1, 1):

    1.000000000000 1.060707743385 0.530353871693 1.000000000000 1.000000000000

 Power filter parameters, Fgamma, gamma =  0.28400   0.14200

 Metrics information for Grid 01:
 ===============================

 Minimum X-grid spacing, DXmin =  2.00000000E-02 km
 Maximum X-grid spacing, DXmax =  2.00000000E-02 km
 Minimum Y-grid spacing, DYmin =  2.00000000E-02 km
 Maximum Y-grid spacing, DYmax =  2.00000000E-02 km
 Minimum Z-grid spacing, DZmin = -1.50000000E-01 m
 Maximum Z-grid spacing, DZmax =  5.87500000E-01 m

 Minimum barotropic Courant Number =  1.23806805E-02
 Maximum barotropic Courant Number =  1.89792238E-01
 Maximum Coriolis   Courant Number =  0.00000000E+00

 Node   #  1 CPU:       0.039

 CHECK_MULTIFILE - Error while checking input Forcing file:
                   Data/swan_shoreface_angle_forc.nc
                   last data time record available is for day:     0 00:00:00
                   but data is needed to finish run until day:     0 06:00:00

 Elapsed CPU time (seconds):

 Node   #  0 CPU:       0.037
 Total:                 0.076

 Nonlinear model elapsed time profile:

  Allocation and array initialization ..............         0.014  (18.4211 %)
  2D/3D coupling, vertical metrics .................         0.002  ( 2.6306 %)
  Omega vertical velocity ..........................         0.001  ( 1.3160 %)
  Equation of state for seawater ...................         0.001  ( 1.3160 %)
                                              Total:         0.018   23.6837

 Nonlinear model message Passage profile:

  Message Passage: 3D halo exchanges ...............         0.001  ( 1.3160 %)
  Message Passage: data broadcast ..................         0.027  (35.5262 %)
                                              Total:         0.028   36.8422

 All percentages are with respect to total time =            0.076

 ROMS/TOMS - Output NetCDF summary for Grid 01:

 Analytical header files used:

     ROMS/Functionals/ana_grid.h
     ROMS/Functionals/ana_initial.h
     ROMS/Functionals/ana_mask.h
     ROMS/Functionals/ana_sediment.h

 ROMS/TOMS - I/O error ............... exit_flag:   4


 ERROR: I/O related problem.
-- end OPENMPI run --

edwardrivera
Posts: 11
Joined: Wed Apr 24, 2013 11:08 am
Location: CariCOOS

Re: I/O error ............... exit_flag: 4 in SHOREFACE case

#2 Unread post by edwardrivera »

Hi

You are right. I just ran the test case and it gave me the same results. But I managed to run it successfully by downgrading the revision version.

Try this in the ROMS source directory:

$ svn update 700 -r

Good luck!

togye176

Re: I/O error ............... exit_flag: 4 in SHOREFACE case

#3 Unread post by togye176 »

Thank

But, if I type '$svn update 700 -r' it doesn't work with following message.

svn: missing argument: r

edwardrivera
Posts: 11
Joined: Wed Apr 24, 2013 11:08 am
Location: CariCOOS

Re: I/O error ............... exit_flag: 4 in SHOREFACE case

#4 Unread post by edwardrivera »

Forget about the "$" symbol, it just means that doesn't need to be a -su user. Try just:

svn update -r 700

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