Why my ROMS can't calculate?

[langlangxie]

Now,I want to use ROMS to make a model of South China Sea.First,I product some files in using agrif_roms.such as *_bry.nc,*_ini.nc,*_grd.nc,*_frc.nc.*_clm.nc,then I take these files into my project,and compile ROMS,lastly,I put these into cluster computing.In processing,I'm sure compiling and Job are not error.But it can't compute.
Can you help me!
Thanks!

[kate]

You're not giving us much to go on. How does it not compute? Can you provide the error output from ROMS or did you not get any?

[langlangxie]

You're not giving us much to go on. How does it not compute? Can you provide the error output from ROMS or did you not get any?

I don't get any error.The ROMS just stop computing.
Thanks for your help!

[kate]

Still, how far does it get? What is the last thing ROMS outputs?

[langlangxie]

Still, how far does it get? What is the last thing ROMS outputs?

No time.

+ NSLOTS='cat${PBS_NODEFILE}| wc -l'
+ echo 'This jobs is 4681.node200@general'
This jobs is 4681.node200@general
+ cd /dcfs2/users/langlangxie/Projects/upwelling
+ /dcfs2/program/mpi/mvapich2/1.8/pgcc.pgf90/bin/mpirun_rsh -ssh -np 'cat${PBS_NODEFILE}|' wc -l -hostfile /opt/gridview/pbs/dispatcher/aux//4681.node200 ./oceanM upwelling.in
usage: mpirun_rsh [-v] [-sg group] [-rsh|-ssh] [-debug] -[tv] [-xterm] [-show] [-legacy] -np N(-hostfile hfile | h1 h2 ... hN) a.out args | -config configfile (-hostfile hfile | h1 h2 ... hN)]
Where:
sg => execute the processes as different group ID
rsh => to use rsh for connecting
ssh => to use ssh for connecting
debug => run each process under the control of gdb
tv => run each process under the control of totalview
xterm => run remote processes under xterm
show => show command for remote execution but don't run it
legacy => use old startup method (1 ssh/process)
np => specify the number of processes
h1 h2... => names of hosts where processes should run
or hostfile => name of file containing hosts, one per line
a.out => name of MPI binary
args => arguments for MPI binary
config => name of file containing the exe information: each line has the form -n numProc : exe args

real 0.02
user 0.00
sys 0.00
+ exit 0
I was placed in a computer cluster computing.So can you give me some suggestions?

[kapitzah]

The argument to option -np seems to have a misplaced '-character. It is

-np 'cat${PBS_NODEFILE}|' wc -l

while it should be something like

-np `cat ${PBS_NODEFILE}| wc -l`

Please note the backticks ` instead of '

[langlangxie]

The argument to option -np seems to have a misplaced '-character. It is

-np 'cat${PBS_NODEFILE}|' wc -l

while it should be something like

-np `cat ${PBS_NODEFILE}| wc -l`

Please note the backticks ` instead of '

Thank you very much!