problem when first running upwelling test
problem when first running upwelling test
Hi
I'm trying to run upwelling test and I get some troubles, like:
rm -f -r core *.ipo /Projects/upwelling/Build /home/fei/make_macros.mk
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:625:22: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
compilation terminated.
makefile:238: INCLUDING FILE /home/fei/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cp -f /home/fei/netcdf/include/netcdf.mod /Projects/upwelling/Build
cp -f /home/fei/netcdf/include/typesizes.mod /Projects/upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/Projects/upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /Projects/upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /Projects/upwelling -I Master -I Compilers --silent --moddir /Projects/upwelling/Build ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/nesting.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/output.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Functionals/analytical.F ROMS/Utility/abort.F ROMS/Utility/array_modes.F ROMS/Utility/back_cost.F ROMS/Utility/cgradient.F ROMS/Utility/checkadj.F ROMS/Utility/checkdefs.F ROMS/Utility/checkerror.F ROMS/Utility/checkvars.F ROMS/Utility/close_io.F ROMS/Utility/congrad.F ROMS/Utility/convolve.F ROMS/Utility/cost_grad.F ROMS/Utility/def_avg.F ROMS/Utility/def_diags.F ROMS/Utility/def_dim.F ROMS/Utility/def_error.F ROMS/Utility/def_floats.F ROMS/Utility/def_gst.F ROMS/Utility/def_hessian.F ROMS/Utility/def_his.F ROMS/Utility/def_impulse.F ROMS/Utility/def_info.F ROMS/Utility/def_ini.F ROMS/Utility/def_lanczos.F ROMS/Utility/def_mod.F ROMS/Utility/def_norm.F ROMS/Utility/def_rst.F ROMS/Utility/def_station.F ROMS/Utility/def_tides.F ROMS/Utility/def_var.F ROMS/Utility/distribute.F ROMS/Utility/dotproduct.F ROMS/Utility/erf.F ROMS/Utility/extract_obs.F ROMS/Utility/extract_sta.F ROMS/Utility/frc_weak.F ROMS/Utility/gasdev.F ROMS/Utility/get_2dfld.F ROMS/Utility/get_2dfldr.F ROMS/Utility/get_3dfld.F ROMS/Utility/get_3dfldr.F ROMS/Utility/get_bounds.F ROMS/Utility/get_cycle.F ROMS/Utility/get_date.F ROMS/Utility/get_grid.F ROMS/Utility/get_gst.F ROMS/Utility/get_ngfld.F ROMS/Utility/get_ngfldr.F ROMS/Utility/get_state.F ROMS/Utility/get_varcoords.F ROMS/Utility/grid_coords.F ROMS/Utility/ini_adjust.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/ini_lanczos.F ROMS/Utility/inner2state.F ROMS/Utility/inp_par.F ROMS/Utility/inquire.F ROMS/Utility/interpolate.F ROMS/Utility/lbc.F ROMS/Utility/lubksb.F ROMS/Utility/ludcmp.F ROMS/Utility/metrics.F ROMS/Utility/mp_exchange.F ROMS/Utility/mp_routines.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/nf_fread2d.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/nf_fread3d.F ROMS/Utility/nf_fread4d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/normalization.F ROMS/Utility/nrutil.F ROMS/Utility/ntimestep.F ROMS/Utility/obs_cost.F ROMS/Utility/obs_depth.F ROMS/Utility/obs_initial.F ROMS/Utility/obs_read.F ROMS/Utility/obs_write.F ROMS/Utility/packing.F ROMS/Utility/posterior.F ROMS/Utility/posterior_var.F ROMS/Utility/ran1.F ROMS/Utility/random_ic.F ROMS/Utility/ran_state.F ROMS/Utility/read_asspar.F ROMS/Utility/read_biopar.F ROMS/Utility/read_couplepar.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/read_fltpar.F ROMS/Utility/read_phypar.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_stapar.F ROMS/Utility/regrid.F ROMS/Utility/rep_matrix.F ROMS/Utility/set_2dfld.F ROMS/Utility/set_2dfldr.F ROMS/Utility/set_3dfld.F ROMS/Utility/set_3dfldr.F ROMS/Utility/set_contact.F ROMS/Utility/set_diags.F ROMS/Utility/set_masks.F ROMS/Utility/set_ngfld.F ROMS/Utility/set_ngfldr.F ROMS/Utility/set_scoord.F ROMS/Utility/set_weights.F ROMS/Utility/shapiro.F ROMS/Utility/sqlq.F ROMS/Utility/state_addition.F ROMS/Utility/state_copy.F ROMS/Utility/state_dotprod.F ROMS/Utility/state_initialize.F ROMS/Utility/state_product.F ROMS/Utility/state_scale.F ROMS/Utility/stats_modobs.F ROMS/Utility/stiffness.F ROMS/Utility/strings.F ROMS/Utility/sum_grad.F ROMS/Utility/timers.F ROMS/Utility/uv_rotate.F ROMS/Utility/vorticity.F ROMS/Utility/white_noise.F ROMS/Utility/wpoints.F ROMS/Utility/wrt_avg.F ROMS/Utility/wrt_diags.F ROMS/Utility/wrt_error.F ROMS/Utility/wrt_floats.F ROMS/Utility/wrt_gst.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_his.F ROMS/Utility/wrt_impulse.F ROMS/Utility/wrt_info.F ROMS/Utility/wrt_ini.F ROMS/Utility/wrt_rst.F ROMS/Utility/wrt_station.F ROMS/Utility/wrt_tides.F ROMS/Utility/zeta_balance.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_average.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_mixing.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_param.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_tides.F Master/esmf_roms.F Master/master.F Master/ocean_control.F Master/ocean_coupler.F Master/propagator.F Master/roms_export.F Master/roms_import.F > /Projects/upwelling/Build/MakeDepend
cp -p /home/fei/make_macros.mk /Projects/upwelling/Build
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:625:22: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
compilation terminated.
makefile:234: INCLUDING FILE /Projects/upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/Projects/upwelling"' ROMS/Utility/abort.F > /Projects/upwelling/Build/abort.f90
In file included from ROMS/Utility/abort.F:2:0:
ROMS/Include/cppdefs.h:625:0: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
compilation terminated.
make: *** [/Projects/upwelling/Build/abort.f90] Error 1
Who know the solution. Thanks in advance!
I'm trying to run upwelling test and I get some troubles, like:
rm -f -r core *.ipo /Projects/upwelling/Build /home/fei/make_macros.mk
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:625:22: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
compilation terminated.
makefile:238: INCLUDING FILE /home/fei/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cp -f /home/fei/netcdf/include/netcdf.mod /Projects/upwelling/Build
cp -f /home/fei/netcdf/include/typesizes.mod /Projects/upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/Projects/upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /Projects/upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /Projects/upwelling -I Master -I Compilers --silent --moddir /Projects/upwelling/Build ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/nesting.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/output.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Functionals/analytical.F ROMS/Utility/abort.F ROMS/Utility/array_modes.F ROMS/Utility/back_cost.F ROMS/Utility/cgradient.F ROMS/Utility/checkadj.F ROMS/Utility/checkdefs.F ROMS/Utility/checkerror.F ROMS/Utility/checkvars.F ROMS/Utility/close_io.F ROMS/Utility/congrad.F ROMS/Utility/convolve.F ROMS/Utility/cost_grad.F ROMS/Utility/def_avg.F ROMS/Utility/def_diags.F ROMS/Utility/def_dim.F ROMS/Utility/def_error.F ROMS/Utility/def_floats.F ROMS/Utility/def_gst.F ROMS/Utility/def_hessian.F ROMS/Utility/def_his.F ROMS/Utility/def_impulse.F ROMS/Utility/def_info.F ROMS/Utility/def_ini.F ROMS/Utility/def_lanczos.F ROMS/Utility/def_mod.F ROMS/Utility/def_norm.F ROMS/Utility/def_rst.F ROMS/Utility/def_station.F ROMS/Utility/def_tides.F ROMS/Utility/def_var.F ROMS/Utility/distribute.F ROMS/Utility/dotproduct.F ROMS/Utility/erf.F ROMS/Utility/extract_obs.F ROMS/Utility/extract_sta.F ROMS/Utility/frc_weak.F ROMS/Utility/gasdev.F ROMS/Utility/get_2dfld.F ROMS/Utility/get_2dfldr.F ROMS/Utility/get_3dfld.F ROMS/Utility/get_3dfldr.F ROMS/Utility/get_bounds.F ROMS/Utility/get_cycle.F ROMS/Utility/get_date.F ROMS/Utility/get_grid.F ROMS/Utility/get_gst.F ROMS/Utility/get_ngfld.F ROMS/Utility/get_ngfldr.F ROMS/Utility/get_state.F ROMS/Utility/get_varcoords.F ROMS/Utility/grid_coords.F ROMS/Utility/ini_adjust.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/ini_lanczos.F ROMS/Utility/inner2state.F ROMS/Utility/inp_par.F ROMS/Utility/inquire.F ROMS/Utility/interpolate.F ROMS/Utility/lbc.F ROMS/Utility/lubksb.F ROMS/Utility/ludcmp.F ROMS/Utility/metrics.F ROMS/Utility/mp_exchange.F ROMS/Utility/mp_routines.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/nf_fread2d.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/nf_fread3d.F ROMS/Utility/nf_fread4d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/normalization.F ROMS/Utility/nrutil.F ROMS/Utility/ntimestep.F ROMS/Utility/obs_cost.F ROMS/Utility/obs_depth.F ROMS/Utility/obs_initial.F ROMS/Utility/obs_read.F ROMS/Utility/obs_write.F ROMS/Utility/packing.F ROMS/Utility/posterior.F ROMS/Utility/posterior_var.F ROMS/Utility/ran1.F ROMS/Utility/random_ic.F ROMS/Utility/ran_state.F ROMS/Utility/read_asspar.F ROMS/Utility/read_biopar.F ROMS/Utility/read_couplepar.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/read_fltpar.F ROMS/Utility/read_phypar.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_stapar.F ROMS/Utility/regrid.F ROMS/Utility/rep_matrix.F ROMS/Utility/set_2dfld.F ROMS/Utility/set_2dfldr.F ROMS/Utility/set_3dfld.F ROMS/Utility/set_3dfldr.F ROMS/Utility/set_contact.F ROMS/Utility/set_diags.F ROMS/Utility/set_masks.F ROMS/Utility/set_ngfld.F ROMS/Utility/set_ngfldr.F ROMS/Utility/set_scoord.F ROMS/Utility/set_weights.F ROMS/Utility/shapiro.F ROMS/Utility/sqlq.F ROMS/Utility/state_addition.F ROMS/Utility/state_copy.F ROMS/Utility/state_dotprod.F ROMS/Utility/state_initialize.F ROMS/Utility/state_product.F ROMS/Utility/state_scale.F ROMS/Utility/stats_modobs.F ROMS/Utility/stiffness.F ROMS/Utility/strings.F ROMS/Utility/sum_grad.F ROMS/Utility/timers.F ROMS/Utility/uv_rotate.F ROMS/Utility/vorticity.F ROMS/Utility/white_noise.F ROMS/Utility/wpoints.F ROMS/Utility/wrt_avg.F ROMS/Utility/wrt_diags.F ROMS/Utility/wrt_error.F ROMS/Utility/wrt_floats.F ROMS/Utility/wrt_gst.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_his.F ROMS/Utility/wrt_impulse.F ROMS/Utility/wrt_info.F ROMS/Utility/wrt_ini.F ROMS/Utility/wrt_rst.F ROMS/Utility/wrt_station.F ROMS/Utility/wrt_tides.F ROMS/Utility/zeta_balance.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_average.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_mixing.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_param.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_tides.F Master/esmf_roms.F Master/master.F Master/ocean_control.F Master/ocean_coupler.F Master/propagator.F Master/roms_export.F Master/roms_import.F > /Projects/upwelling/Build/MakeDepend
cp -p /home/fei/make_macros.mk /Projects/upwelling/Build
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:625:22: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
compilation terminated.
makefile:234: INCLUDING FILE /Projects/upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/Projects/upwelling"' ROMS/Utility/abort.F > /Projects/upwelling/Build/abort.f90
In file included from ROMS/Utility/abort.F:2:0:
ROMS/Include/cppdefs.h:625:0: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
compilation terminated.
make: *** [/Projects/upwelling/Build/abort.f90] Error 1
Who know the solution. Thanks in advance!
Re: problem when first running upwelling test
Are you using build.bash or the raw makefile? Where are you compiling from relative you your source code? There is something wrong with your MY_HEADER_DIR value. If using build.bash, this comes from MY_ROOT_DIR and MY_PROJECT_DIR. How do you have them set?Compilers/../ROMS/Include/cppdefs.h:625:22: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
Re: problem when first running upwelling test
Thanks kate for your answer
I'm using build.bash and the raw makefile. My source code is at /home/fei/roms/trunk.
MY_ROOT_DIR and MY_PROJECT_DIR as follows:
Thanks again
I'm using build.bash and the raw makefile. My source code is at /home/fei/roms/trunk.
MY_ROOT_DIR and MY_PROJECT_DIR as follows:
Code: Select all
export MY_ROOT_DIR=/home/fei/
export MY_PROJECT_DIR=${MY_PROJECT_DIR}/Projects/upwelling
There seems to be wrong in make_macros.h. Should I configure it?In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:625:22: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
Thanks again
Re: problem when first running upwelling test
This last line is adding "/Projects/upwelling" to the previous definition of MY_PROJECT_DIR. It seems that it's previous definition was a null string. Did you mean:shifei wrote:I'm using build.bash and the raw makefile. My source code is at /home/fei/roms/trunk.
MY_ROOT_DIR and MY_PROJECT_DIR as follows:Code: Select all
export MY_ROOT_DIR=/home/fei/ export MY_PROJECT_DIR=${MY_PROJECT_DIR}/Projects/upwelling
Code: Select all
export MY_PROJECT_DIR=${MY_ROOT_DIR}/Projects/upwelling
Code: Select all
export MY_ROOT_DIR=/home/fei/roms/trunk
Re: problem when first running upwelling test
Hi kate:
I'm sorry. I'm so careless. I modify the MY_PROJECT_DIR:
After I run again, I got the problem as follow:
What's the meaning of the last line ![Question :?:](./images/smilies/icon_question.gif)
I'm sorry. I'm so careless. I modify the MY_PROJECT_DIR:
Code: Select all
MY_PROJECT_DIR=${MY_ROOT_DIR}/Projects/upwelling
Code: Select all
rm -f -r core *.ipo /home/fei//Projects/upwelling/Build /home/fei/make_macros.mk
makefile:238: INCLUDING FILE /home/fei/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cp -f /home/fei/netcdf/include/netcdf.mod /home/fei//Projects/upwelling/Build
cp -f /home/fei/netcdf/include/typesizes.mod /home/fei//Projects/upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/home/fei//Projects/upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /home/fei//Projects/upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /home/fei//Projects/upwelling -I Master -I Compilers --silent --moddir /home/fei//Projects/upwelling/Build ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/nesting.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/output.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Functionals/analytical.F ROMS/Utility/abort.F ROMS/Utility/array_modes.F ROMS/Utility/back_cost.F ROMS/Utility/cgradient.F ROMS/Utility/checkadj.F ROMS/Utility/checkdefs.F ROMS/Utility/checkerror.F ROMS/Utility/checkvars.F ROMS/Utility/close_io.F ROMS/Utility/congrad.F ROMS/Utility/convolve.F ROMS/Utility/cost_grad.F ROMS/Utility/def_avg.F ROMS/Utility/def_diags.F ROMS/Utility/def_dim.F ROMS/Utility/def_error.F ROMS/Utility/def_floats.F ROMS/Utility/def_gst.F ROMS/Utility/def_hessian.F ROMS/Utility/def_his.F ROMS/Utility/def_impulse.F ROMS/Utility/def_info.F ROMS/Utility/def_ini.F ROMS/Utility/def_lanczos.F ROMS/Utility/def_mod.F ROMS/Utility/def_norm.F ROMS/Utility/def_rst.F ROMS/Utility/def_station.F ROMS/Utility/def_tides.F ROMS/Utility/def_var.F ROMS/Utility/distribute.F ROMS/Utility/dotproduct.F ROMS/Utility/erf.F ROMS/Utility/extract_obs.F ROMS/Utility/extract_sta.F ROMS/Utility/frc_weak.F ROMS/Utility/gasdev.F ROMS/Utility/get_2dfld.F ROMS/Utility/get_2dfldr.F ROMS/Utility/get_3dfld.F ROMS/Utility/get_3dfldr.F ROMS/Utility/get_bounds.F ROMS/Utility/get_cycle.F ROMS/Utility/get_date.F ROMS/Utility/get_grid.F ROMS/Utility/get_gst.F ROMS/Utility/get_ngfld.F ROMS/Utility/get_ngfldr.F ROMS/Utility/get_state.F ROMS/Utility/get_varcoords.F ROMS/Utility/grid_coords.F ROMS/Utility/ini_adjust.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/ini_lanczos.F ROMS/Utility/inner2state.F ROMS/Utility/inp_par.F ROMS/Utility/inquire.F ROMS/Utility/interpolate.F ROMS/Utility/lbc.F ROMS/Utility/lubksb.F ROMS/Utility/ludcmp.F ROMS/Utility/metrics.F ROMS/Utility/mp_exchange.F ROMS/Utility/mp_routines.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/nf_fread2d.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/nf_fread3d.F ROMS/Utility/nf_fread4d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/normalization.F ROMS/Utility/nrutil.F ROMS/Utility/ntimestep.F ROMS/Utility/obs_cost.F ROMS/Utility/obs_depth.F ROMS/Utility/obs_initial.F ROMS/Utility/obs_read.F ROMS/Utility/obs_write.F ROMS/Utility/packing.F ROMS/Utility/posterior.F ROMS/Utility/posterior_var.F ROMS/Utility/ran1.F ROMS/Utility/random_ic.F ROMS/Utility/ran_state.F ROMS/Utility/read_asspar.F ROMS/Utility/read_biopar.F ROMS/Utility/read_couplepar.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/read_fltpar.F ROMS/Utility/read_phypar.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_stapar.F ROMS/Utility/regrid.F ROMS/Utility/rep_matrix.F ROMS/Utility/set_2dfld.F ROMS/Utility/set_2dfldr.F ROMS/Utility/set_3dfld.F ROMS/Utility/set_3dfldr.F ROMS/Utility/set_contact.F ROMS/Utility/set_diags.F ROMS/Utility/set_masks.F ROMS/Utility/set_ngfld.F ROMS/Utility/set_ngfldr.F ROMS/Utility/set_scoord.F ROMS/Utility/set_weights.F ROMS/Utility/shapiro.F ROMS/Utility/sqlq.F ROMS/Utility/state_addition.F ROMS/Utility/state_copy.F ROMS/Utility/state_dotprod.F ROMS/Utility/state_initialize.F ROMS/Utility/state_product.F ROMS/Utility/state_scale.F ROMS/Utility/stats_modobs.F ROMS/Utility/stiffness.F ROMS/Utility/strings.F ROMS/Utility/sum_grad.F ROMS/Utility/timers.F ROMS/Utility/uv_rotate.F ROMS/Utility/vorticity.F ROMS/Utility/white_noise.F ROMS/Utility/wpoints.F ROMS/Utility/wrt_avg.F ROMS/Utility/wrt_diags.F ROMS/Utility/wrt_error.F ROMS/Utility/wrt_floats.F ROMS/Utility/wrt_gst.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_his.F ROMS/Utility/wrt_impulse.F ROMS/Utility/wrt_info.F ROMS/Utility/wrt_ini.F ROMS/Utility/wrt_rst.F ROMS/Utility/wrt_station.F ROMS/Utility/wrt_tides.F ROMS/Utility/zeta_balance.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_average.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_mixing.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_param.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_tides.F Master/esmf_roms.F Master/master.F Master/ocean_control.F Master/ocean_coupler.F Master/propagator.F Master/roms_export.F Master/roms_import.F > /home/fei//Projects/upwelling/Build/MakeDepend
cp -p /home/fei/make_macros.mk /home/fei//Projects/upwelling/Build
makefile:234: INCLUDING FILE /home/fei//Projects/upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/fei//Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/fei//Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/home/fei//Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/fei//Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/fei//Projects/upwelling"' ROMS/Utility/abort.F > /home/fei//Projects/upwelling/Build/abort.f90
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/abort.f90
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/fei//Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/fei//Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/home/fei//Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/fei//Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/fei//Projects/upwelling"' Master/ocean_control.F > /home/fei//Projects/upwelling/Build/ocean_control.f90
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/ocean_control.f90
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/fei//Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/fei//Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/home/fei//Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/fei//Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/fei//Projects/upwelling"' ROMS/Functionals/analytical.F > /home/fei//Projects/upwelling/Build/analytical.f90
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/analytical.f90
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/fei//Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/fei//Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/home/fei//Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/fei//Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/fei//Projects/upwelling"' ROMS/Utility/distribute.F > /home/fei//Projects/upwelling/Build/distribute.f90
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/distribute.f90
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/fei//Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/fei//Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/home/fei//Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/fei//Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/fei//Projects/upwelling"' ROMS/Modules/mod_iounits.F > /home/fei//Projects/upwelling/Build/mod_iounits.f90
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/mod_iounits.f90
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/fei//Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/fei//Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/home/fei//Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/fei//Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/fei//Projects/upwelling"' ROMS/Modules/mod_param.F > /home/fei//Projects/upwelling/Build/mod_param.f90
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/mod_param.f90
/usr/bin/cpp -P -traditional -DMPI -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/home/fei/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/fei//Projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/fei//Projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="687M"' -IROMS/Include -I/home/fei//Projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/fei//Projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/fei//Projects/upwelling"' ROMS/Modules/mod_kinds.F > /home/fei//Projects/upwelling/Build/mod_kinds.f90
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/mod_kinds.f90
cd /home/fei//Projects/upwelling/Build; -c -heap-arrays -fp-model precise -g -check bounds -traceback -check uninit -warn interfaces,nouncalled -gen-interfaces -free mod_kinds.f90
/bin/sh: 1: -c: not found
make: *** [/home/fei//Projects/upwelling/Build/mod_kinds.o] Error 127
![Question :?:](./images/smilies/icon_question.gif)
Re: problem when first running upwelling test
This one has made it into the FAQ:
The command:
FC := $(shell which ${FC})
in the Compilers/xxx-xxx.mk file has failed to find the compiler you specified, setting FC to the null string. You need to find out which compiler you were asking it to look for and to make sure it is in your path. If the flag USE_MPIF90 is set, it will be looking for "mpif90". What do you get from the command "which mpif90"? If you are trying for a serial run first, what does "which gfortran" give you?
Code: Select all
cd Build; -c -O3 mod_kinds.f90
/bin/sh: -c: not found
FC := $(shell which ${FC})
in the Compilers/xxx-xxx.mk file has failed to find the compiler you specified, setting FC to the null string. You need to find out which compiler you were asking it to look for and to make sure it is in your path. If the flag USE_MPIF90 is set, it will be looking for "mpif90". What do you get from the command "which mpif90"? If you are trying for a serial run first, what does "which gfortran" give you?
Re: problem when first running upwelling test
Hi kate,
I got nothing from the command 'which mpif90 which gfortran'
I use ifort compiler. After I put 'which ifort',I got '/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64/ifort'.
I tried to set FC :=$(/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64/ifort).
The problem is still unsolved. What should I configure FC?
I got nothing from the command 'which mpif90 which gfortran'
I use ifort compiler. After I put 'which ifort',I got '/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64/ifort'.
I tried to set FC :=$(/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64/ifort).
The problem is still unsolved. What should I configure FC?
Re: problem when first running upwelling test
Assuming you are on linux, you want to set FORT to ifort, which will include the Compilers/Linux-ifort.mk file. There, it sets FC to ifort, then:
Then later, it does:
So, how are you setting USE_MPI and USE_MPIF90? Where did you set FC to its full path?
Code: Select all
ifdef USE_MPI
CPPFLAGS += -DMPI
ifdef USE_MPIF90
FC := mpif90
else
LIBS += -lfmpi-pgi -lmpi-pgi
endif
endif
Code: Select all
FC := $(shell which ${FC})
Re: problem when first running upwelling test
Hi kate,
I am on linux, I want to set FORT to ifort.
In Linux-ifort.mk file, I didn't set USE_MPI and USE_MPIF90.
I have read the FAQ, but I don't how to set them.
how can I set the USE_MPI, USE_MPIF90 and the FC to its full path.
I am on linux, I want to set FORT to ifort.
In Linux-ifort.mk file, I didn't set USE_MPI and USE_MPIF90.
I have read the FAQ, but I don't how to set them.
how can I set the USE_MPI, USE_MPIF90 and the FC to its full path.
Re: problem when first running upwelling test
What happens if you set FC to the full path, then comment out this line:
Code: Select all
FC := $(shell which ${FC})
Re: problem when first running upwelling test
Kate, I'm sorry for my not reply, because I was on a business trip several days ago.
In the following code
If I set FC
I will get
In the following code
Code: Select all
ifdef USE_MPI
CPPFLAGS += -DMPI
ifdef USE_MPIF90
FC := /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64/ifort
LD := $(FC)
else
LIBS += -lfmpi-pgi -lmpi-pgi
If I set FC
Code: Select all
FC := /home/fei/local/openmpi/bin/mpif90
Code: Select all
ROMS/Bin/cpp_clean /home/fei//Projects/upwelling/Build/mod_kinds.f90
cd /home/fei//Projects/upwelling/Build; ifort -c -heap-arrays -fp-model precise -openmp -fpp -g -check bounds -traceback -check uninit -warn interfaces,nouncalled -gen-interfaces -free mod_kinds.f90
/bin/sh: 1: ifort: not found
make: *** [/home/fei//Projects/upwelling/Build/mod_kinds.o] Error 127
Re: problem when first running upwelling test
Did you try what I suggest in my previous post? Don't mess with the MPI section of you aren't trying for MPI.
So you're getting nothing from "which ifort" from inside the makefile, but you are getting the correct path from outside. Here is where you need a crash course on Unix shells and environment variables, specifically the $PATH environment variable. Simpler to try my previous post.
So you're getting nothing from "which ifort" from inside the makefile, but you are getting the correct path from outside. Here is where you need a crash course on Unix shells and environment variables, specifically the $PATH environment variable. Simpler to try my previous post.
Re: problem when first running upwelling test
HI it seems that i do have the same problem, but i try as much as i can to fix it but still the same problem
So i m using cygwin on my windows, my header are as follow:
export ROMS_APPLICATION=UPWELLING
# Set a local environmental variable to define the path to the directories
# where all this project's files are kept.
export MY_ROOT_DIR=/home/roms
export MY_PROJECT_DIR=${MY_ROOT_DIR}/Projects/Upwelling
# The path to the user's local current ROMS source code.
#
# If using svn locally, this would be the user's Working Copy Path (WCPATH).
# Note that one advantage of maintaining your source code locally with svn
# is that when working simultaneously on multiple machines (e.g. a local
# workstation, a local cluster and a remote supercomputer) you can checkout
# the latest release and always get an up-to-date customized source on each
# machine. This script is designed to more easily allow for differing paths
# to the code and inputs on differing machines.
#export MY_ROMS_SRC=${MY_ROOT_DIR}/branches/arango
export MY_ROMS_SRC=${MY_ROOT_DIR}/trunk
and when i compile it returns :
$ ./build.bash
rm -f -r core *.ipo /home/roms/Projects/Upwelling/Build /home/make_macros.mk
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:632:22: fatal error: /home/roms/Projects/Upwelling/upwelling.h: No such file or directory
# include ROMS_HEADER
^
compilation terminated.
makefile:238: INCLUDING FILE /home/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cp -f /usr/local/include/netcdf.mod /home/roms/Projects/Upwelling/Build
cp -f /usr/local/include/typesizes.mod /home/roms/Projects/Upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/home/roms/Projects/Upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /home/roms/Projects/Upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /home/roms/Projects/Upwelling -I Master -I Compilers --silent --moddir /home/roms/Projects/Upwelling/Build ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/nesting.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/output.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Functionals/analytical.F ROMS/Utility/def_diags.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/get_2dfld.F ROMS/Utility/convolve.F ROMS/Utility/nf_fread3d.F ROMS/Utility/wrt_his.F ROMS/Utility/state_addition.F ROMS/Utility/nrutil.F ROMS/Utility/state_initialize.F ROMS/Utility/read_asspar.F ROMS/Utility/def_hessian.F ROMS/Utility/get_3dfld.F ROMS/Utility/inner2state.F ROMS/Utility/read_phypar.F ROMS/Utility/set_contact.F ROMS/Utility/ludcmp.F ROMS/Utility/ini_lanczos.F ROMS/Utility/abort.F ROMS/Utility/def_ini.F ROMS/Utility/obs_read.F ROMS/Utility/read_biopar.F ROMS/Utility/back_cost.F ROMS/Utility/checkadj.F ROMS/Utility/stats_modobs.F ROMS/Utility/get_cycle.F ROMS/Utility/nf_fread4d.F ROMS/Utility/wrt_diags.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/lubksb.F ROMS/Utility/wrt_floats.F ROMS/Utility/extract_sta.F ROMS/Utility/wrt_info.F ROMS/Utility/state_scale.F ROMS/Utility/def_lanczos.F ROMS/Utility/regrid.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/packing.F ROMS/Utility/def_gst.F ROMS/Utility/def_mod.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_fltpar.F ROMS/Utility/get_bounds.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_gst.F ROMS/Utility/congrad.F ROMS/Utility/checkdefs.F ROMS/Utility/wpoints.F ROMS/Utility/sqlq.F ROMS/Utility/def_tides.F ROMS/Utility/zeta_balance.F ROMS/Utility/set_3dfld.F ROMS/Utility/normalization.F ROMS/Utility/posterior.F ROMS/Utility/set_2dfldr.F ROMS/Utility/obs_cost.F ROMS/Utility/checkerror.F ROMS/Utility/obs_depth.F ROMS/Utility/nf_fread2d.F ROMS/Utility/set_2dfld.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/wrt_station.F ROMS/Utility/get_3dfldr.F ROMS/Utility/distribute.F ROMS/Utility/state_dotprod.F ROMS/Utility/get_ngfld.F ROMS/Utility/rep_matrix.F ROMS/Utility/frc_weak.F ROMS/Utility/vorticity.F ROMS/Utility/cost_grad.F ROMS/Utility/def_error.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/mp_exchange.F ROMS/Utility/def_avg.F ROMS/Utility/set_ngfldr.F ROMS/Utility/check_multifile.F ROMS/Utility/timers.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/gasdev.F ROMS/Utility/ran1.F ROMS/Utility/array_modes.F ROMS/Utility/interpolate.F ROMS/Utility/stiffness.F ROMS/Utility/get_state.F ROMS/Utility/dotproduct.F ROMS/Utility/ntimestep.F ROMS/Utility/shapiro.F ROMS/Utility/close_io.F ROMS/Utility/wrt_ini.F ROMS/Utility/extract_obs.F ROMS/Utility/get_grid.F ROMS/Utility/wrt_tides.F ROMS/Utility/get_2dfldr.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/set_weights.F ROMS/Utility/ini_adjust.F ROMS/Utility/get_ngfldr.F ROMS/Utility/checkvars.F ROMS/Utility/set_masks.F ROMS/Utility/get_varcoords.F ROMS/Utility/def_impulse.F ROMS/Utility/def_dim.F ROMS/Utility/read_stapar.F ROMS/Utility/def_var.F ROMS/Utility/inquire.F ROMS/Utility/wrt_error.F ROMS/Utility/get_date.F ROMS/Utility/wrt_avg.F ROMS/Utility/posterior_var.F ROMS/Utility/def_rst.F ROMS/Utility/white_noise.F ROMS/Utility/def_norm.F ROMS/Utility/mp_routines.F ROMS/Utility/state_copy.F ROMS/Utility/def_info.F ROMS/Utility/lbc.F ROMS/Utility/def_his.F ROMS/Utility/random_ic.F ROMS/Utility/def_floats.F ROMS/Utility/state_product.F ROMS/Utility/cgradient.F ROMS/Utility/erf.F ROMS/Utility/get_gst.F ROMS/Utility/ran_state.F ROMS/Utility/strings.F ROMS/Utility/set_scoord.F ROMS/Utility/sum_grad.F ROMS/Utility/metrics.F ROMS/Utility/uv_rotate.F ROMS/Utility/read_couplepar.F ROMS/Utility/set_3dfldr.F ROMS/Utility/wrt_impulse.F ROMS/Utility/set_diags.F ROMS/Utility/obs_initial.F ROMS/Utility/def_station.F ROMS/Utility/set_ngfld.F ROMS/Utility/inp_par.F ROMS/Utility/grid_coords.F ROMS/Utility/wrt_rst.F ROMS/Utility/obs_write.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_param.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_average.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_tides.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_mixing.F Master/ocean_control.F Master/esmf_roms.F Master/ocean_coupler.F Master/roms_export.F Master/master.F Master/propagator.F Master/roms_import.F > /home/roms/Projects/Upwelling/Build/MakeDepend
cp -p /home/make_macros.mk /home/roms/Projects/Upwelling/Build
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:632:22: fatal error: /home/roms/Projects/Upwelling/upwelling.h: No such file or directory
# include ROMS_HEADER
^
compilation terminated.
makefile:234: INCLUDING FILE /home/roms/Projects/Upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/usr/bin/cpp -P -traditional -DCYGWIN -DX86_64 -DGFORTRAN -D'ROOT_DIR="/home/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/roms/Projects/Upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/roms/Projects/Upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="718"' -IROMS/Include -I/home/roms/Projects/Upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/roms/Projects/Upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/roms/Projects/Upwelling"' ROMS/Utility/def_diags.F > /home/roms/Projects/Upwelling/Build/def_diags.f90
In file included from ROMS/Utility/def_diags.F:2:0:
ROMS/Include/cppdefs.h:632:0: fatal error: /home/roms/Projects/Upwelling/upwelling.h: No such file or directory
# include ROMS_HEADER
^
compilation terminated.
ROMS/Utility/Module.mk:15: recipe for target '/home/roms/Projects/Upwelling/Build/def_diags.f90' failed
make: *** [/home/roms/Projects/Upwelling/Build/def_diags.f90] Error 1
Any idea what is the problem
thank you.
So i m using cygwin on my windows, my header are as follow:
export ROMS_APPLICATION=UPWELLING
# Set a local environmental variable to define the path to the directories
# where all this project's files are kept.
export MY_ROOT_DIR=/home/roms
export MY_PROJECT_DIR=${MY_ROOT_DIR}/Projects/Upwelling
# The path to the user's local current ROMS source code.
#
# If using svn locally, this would be the user's Working Copy Path (WCPATH).
# Note that one advantage of maintaining your source code locally with svn
# is that when working simultaneously on multiple machines (e.g. a local
# workstation, a local cluster and a remote supercomputer) you can checkout
# the latest release and always get an up-to-date customized source on each
# machine. This script is designed to more easily allow for differing paths
# to the code and inputs on differing machines.
#export MY_ROMS_SRC=${MY_ROOT_DIR}/branches/arango
export MY_ROMS_SRC=${MY_ROOT_DIR}/trunk
and when i compile it returns :
$ ./build.bash
rm -f -r core *.ipo /home/roms/Projects/Upwelling/Build /home/make_macros.mk
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:632:22: fatal error: /home/roms/Projects/Upwelling/upwelling.h: No such file or directory
# include ROMS_HEADER
^
compilation terminated.
makefile:238: INCLUDING FILE /home/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cp -f /usr/local/include/netcdf.mod /home/roms/Projects/Upwelling/Build
cp -f /usr/local/include/typesizes.mod /home/roms/Projects/Upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/home/roms/Projects/Upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /home/roms/Projects/Upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /home/roms/Projects/Upwelling -I Master -I Compilers --silent --moddir /home/roms/Projects/Upwelling/Build ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/nesting.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/output.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Functionals/analytical.F ROMS/Utility/def_diags.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/get_2dfld.F ROMS/Utility/convolve.F ROMS/Utility/nf_fread3d.F ROMS/Utility/wrt_his.F ROMS/Utility/state_addition.F ROMS/Utility/nrutil.F ROMS/Utility/state_initialize.F ROMS/Utility/read_asspar.F ROMS/Utility/def_hessian.F ROMS/Utility/get_3dfld.F ROMS/Utility/inner2state.F ROMS/Utility/read_phypar.F ROMS/Utility/set_contact.F ROMS/Utility/ludcmp.F ROMS/Utility/ini_lanczos.F ROMS/Utility/abort.F ROMS/Utility/def_ini.F ROMS/Utility/obs_read.F ROMS/Utility/read_biopar.F ROMS/Utility/back_cost.F ROMS/Utility/checkadj.F ROMS/Utility/stats_modobs.F ROMS/Utility/get_cycle.F ROMS/Utility/nf_fread4d.F ROMS/Utility/wrt_diags.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/lubksb.F ROMS/Utility/wrt_floats.F ROMS/Utility/extract_sta.F ROMS/Utility/wrt_info.F ROMS/Utility/state_scale.F ROMS/Utility/def_lanczos.F ROMS/Utility/regrid.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/packing.F ROMS/Utility/def_gst.F ROMS/Utility/def_mod.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_fltpar.F ROMS/Utility/get_bounds.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_gst.F ROMS/Utility/congrad.F ROMS/Utility/checkdefs.F ROMS/Utility/wpoints.F ROMS/Utility/sqlq.F ROMS/Utility/def_tides.F ROMS/Utility/zeta_balance.F ROMS/Utility/set_3dfld.F ROMS/Utility/normalization.F ROMS/Utility/posterior.F ROMS/Utility/set_2dfldr.F ROMS/Utility/obs_cost.F ROMS/Utility/checkerror.F ROMS/Utility/obs_depth.F ROMS/Utility/nf_fread2d.F ROMS/Utility/set_2dfld.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/wrt_station.F ROMS/Utility/get_3dfldr.F ROMS/Utility/distribute.F ROMS/Utility/state_dotprod.F ROMS/Utility/get_ngfld.F ROMS/Utility/rep_matrix.F ROMS/Utility/frc_weak.F ROMS/Utility/vorticity.F ROMS/Utility/cost_grad.F ROMS/Utility/def_error.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/mp_exchange.F ROMS/Utility/def_avg.F ROMS/Utility/set_ngfldr.F ROMS/Utility/check_multifile.F ROMS/Utility/timers.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/gasdev.F ROMS/Utility/ran1.F ROMS/Utility/array_modes.F ROMS/Utility/interpolate.F ROMS/Utility/stiffness.F ROMS/Utility/get_state.F ROMS/Utility/dotproduct.F ROMS/Utility/ntimestep.F ROMS/Utility/shapiro.F ROMS/Utility/close_io.F ROMS/Utility/wrt_ini.F ROMS/Utility/extract_obs.F ROMS/Utility/get_grid.F ROMS/Utility/wrt_tides.F ROMS/Utility/get_2dfldr.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/set_weights.F ROMS/Utility/ini_adjust.F ROMS/Utility/get_ngfldr.F ROMS/Utility/checkvars.F ROMS/Utility/set_masks.F ROMS/Utility/get_varcoords.F ROMS/Utility/def_impulse.F ROMS/Utility/def_dim.F ROMS/Utility/read_stapar.F ROMS/Utility/def_var.F ROMS/Utility/inquire.F ROMS/Utility/wrt_error.F ROMS/Utility/get_date.F ROMS/Utility/wrt_avg.F ROMS/Utility/posterior_var.F ROMS/Utility/def_rst.F ROMS/Utility/white_noise.F ROMS/Utility/def_norm.F ROMS/Utility/mp_routines.F ROMS/Utility/state_copy.F ROMS/Utility/def_info.F ROMS/Utility/lbc.F ROMS/Utility/def_his.F ROMS/Utility/random_ic.F ROMS/Utility/def_floats.F ROMS/Utility/state_product.F ROMS/Utility/cgradient.F ROMS/Utility/erf.F ROMS/Utility/get_gst.F ROMS/Utility/ran_state.F ROMS/Utility/strings.F ROMS/Utility/set_scoord.F ROMS/Utility/sum_grad.F ROMS/Utility/metrics.F ROMS/Utility/uv_rotate.F ROMS/Utility/read_couplepar.F ROMS/Utility/set_3dfldr.F ROMS/Utility/wrt_impulse.F ROMS/Utility/set_diags.F ROMS/Utility/obs_initial.F ROMS/Utility/def_station.F ROMS/Utility/set_ngfld.F ROMS/Utility/inp_par.F ROMS/Utility/grid_coords.F ROMS/Utility/wrt_rst.F ROMS/Utility/obs_write.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_param.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_average.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_tides.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_mixing.F Master/ocean_control.F Master/esmf_roms.F Master/ocean_coupler.F Master/roms_export.F Master/master.F Master/propagator.F Master/roms_import.F > /home/roms/Projects/Upwelling/Build/MakeDepend
cp -p /home/make_macros.mk /home/roms/Projects/Upwelling/Build
In file included from Compilers/make_macros.h:16:0:
Compilers/../ROMS/Include/cppdefs.h:632:22: fatal error: /home/roms/Projects/Upwelling/upwelling.h: No such file or directory
# include ROMS_HEADER
^
compilation terminated.
makefile:234: INCLUDING FILE /home/roms/Projects/Upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/usr/bin/cpp -P -traditional -DCYGWIN -DX86_64 -DGFORTRAN -D'ROOT_DIR="/home/roms/trunk"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/home/roms/Projects/Upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/home/roms/Projects/Upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="718"' -IROMS/Include -I/home/roms/Projects/Upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/home/roms/Projects/Upwelling -IMaster -ICompilers -D'HEADER_DIR="/home/roms/Projects/Upwelling"' ROMS/Utility/def_diags.F > /home/roms/Projects/Upwelling/Build/def_diags.f90
In file included from ROMS/Utility/def_diags.F:2:0:
ROMS/Include/cppdefs.h:632:0: fatal error: /home/roms/Projects/Upwelling/upwelling.h: No such file or directory
# include ROMS_HEADER
^
compilation terminated.
ROMS/Utility/Module.mk:15: recipe for target '/home/roms/Projects/Upwelling/Build/def_diags.f90' failed
make: *** [/home/roms/Projects/Upwelling/Build/def_diags.f90] Error 1
Any idea what is the problem
thank you.
- arango
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Re: problem when first running upwelling test
The compiler is telling you what the error is. It cannot find the ROMS header file for this application: /Projects/upwelling/upwelling.h. It cannot be more simpler than thatROMS/Include/cppdefs.h:625:0: fatal error: /Projects/upwelling/upwelling.h: No such file or directory
compilation terminated.
make: *** [/Projects/upwelling/Build/abort.f90] Error 1
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