Options: Difference between revisions

Revision as of 12:21, 15 April 2008

CPP Options

This wikipage includes all ROMS CPP options in alphabetic order. A single long page is built to facilitate printing. Each option also has an individual page and its definition below is loaded using labeled section transclusion syntax. The following attributes have been identified to aid in the description of ROMS CPP options:

conflict: indicates mutually exclusive options.
parameter: important standard input parameter(s) associtated with the option.
parent: indicates association to a main option.
related: indicates other affiliated option(s) that may affect or not its scope.
required: indicates other dependent option(s) that must be activated.
routine: main files associated with the option.
variable: important state array(s) associtated with the option.

A

ADD_FSOBC: Option to add tidal elevation to sea surface height climatology, if any, and open boundary conditions data.; variable = ssh, zeta_east, zeta_north, zeta_south, zeta_west; required = SSH_TIDES; related = ZCLIMATOLOGY; related = EAST_FSOBC, NORTH_FSOBC, SOUTH_FSOBC, WEST_FSOBC; routine = set_tides.F

ADD_M2OBC: Option to add tidal currents to 2D momentum climatology, if any, and open boundary conditions data.; variable = ubarclm, vbarclm; variable = ubar_east, ubar_north, ubar_south, ubar_west; variable = vbar_east, vbar_north, vbar_south, vbar_west; required = UV_TIDES; related = M2CLIMATOLOGY; related = EAST_M2OBC, NORTH_M2OBC, SOUTH_M2OBC, WEST_M2OBC; routine = set_tides.F

ADJOINT: Internal option to include adjoint model. It primarily declares and allocate all adjoint state variables and activates all adjoint subroutines.; related = TANGENT

ADM_DRIVER: Option to run the adjoint model as a standalone driver.; related = RPM_DRIVER, TLM_DRIVER; routine = ocean_control.F

AD_SENSITIVITY: Option to run the adjoint sensitivity ocean driver ( Moore et al., 2006).; parent = ADJOINT; routine = adsen_ocean.h, ocean_control.F

AFT_EIGENMODES: Option to run the adjoint finite time eigenvalues driver ( Moore et al., 2004).; parent = ADJOINT; related = FT_EIGENMODES; routine = aft_ocean.h, ocean_control.F

AIR_OCEAN: Option to activate two-way coupling to an atmospheric model. Currently, the coupling is done with the Model Coupling Toolkit (MCT). The coupling is either sequential or concurrent and it is only available for distributed-memory configurations. If concurrent, the MPI communicator is splited into atmosphere and ocean nodes.; conflict = WAVES_OCEAN; routine = master.F, air_ocean.h, coupling.in

ALBEDO: Option to compute net shortwave radiation flux using the Laevastu (1960) cloud correction to the Zillerman (1972) equation for cloudless radiation (Parkinson and Washington, 1979).; variable = srflx; required = ANA_SRFLUX; related = DIURNAL_SRFLUX; routine = analytical.F (ana_srflux)

ANA_BIOLOGY: Option to set biological tracers initial conditions with analytical expressions.; variable = t(:,:,:,:,idbio(1:NBT)); related = BIOLOGY; routine = analytical.F (ana_biology)

ANA_BPFLUX: Option to set passive tracers bottom flux with analytical expressions (usually zero, no bottom flux).; variable = btflx(:,:,NAT+1:NT(ng)); required = BIOLOGY, SEDIMENT; related = ANA_BSFLUX, ANA_BTFLUX; routine = analytical.F (ana_btflux)

ANA_BSFLUX: Option to set kinematic bottom salinity flux with an analytical expression (usually zero, no bottom flux).; variable = btflx(:,:,isalt); required = SALINITY, SOLVE3D; related = ANA_BPFLUX, ANA_BTFLUX; routine = analytical.F (ana_btflux)

ANA_BTFLUX: Option to set kinematic bottom heat flux with an analytical expression (usually zero, no bottom flux).; variable = btflx(:,:,itemp); required = SOLVE3D; related = ANA_BPFLUX, ANA_BSFLUX; routine = analytical.F (ana_btflux)

ANA_CLOUD: Option to set cloud fraction with an analytical expression.; variable = cloud; required = CLOUDS; routine = analytical.F (ana_clouds)

ANA_DIAG: Option to activate the computation of any user specified diagnostics.; routine = analytical (ana_diag), diag.F

ANA_FSOBC: Option to set free-surface open boundary conditions using analytical expressions.; variable = zeta_east, zeta_north, zeta_south, zeta_west; required = OBC; routine = analytical.F (ana_fsobc)

ANA_GRID: Option to set application grid variables with analytical expressions. Mostly, all the idealized test problems use this option. It sets the following grid-related variables: Coriolis parameter, bathymetry, ξ- and η-direction metrics and its derivates, curvilinear grid angle, ξ- and η-direction coordinates, and spherical coordinates, if applicable.; variable = f, h; variable = angler, dmde , dndx, pm , pn; variable = xp, xr, xu, xv, yp, yr, yu, yv; variable = lonp, lonr, lonu, lonv, latp, latr, latu, latv; routine = analytical.F (ana_grid)

ANA_HUMIDITY: Option to set surface air humidity (moisture) with an analytical expression. There are three types of humidity: i) absolute humidity is the density of water vapor, ii) specific humidity is the ratio of the mass of water vapor to the mass of moist air containing the vapor (g/kg), and iii) relative humidity is the ratio of the actual mixing ratio to saturation mixing ratio of the air at a given temperature and pressure (percentage).; variable = Hair; required = ALBEDO, BULK_FLUXES, ECOSIM; routine = analytical.F (ana_humid)

ANA_INITIAL: Option to set initial conditions for free-surface, momentum, and tracers with analytical expressions. Mostly, all the idealized test problems use this option.; variable = zeta, ubar, vbar; variable = u, v, t; conflict = INI_FILE; routine = analytical.F (ana_initial)

ANA_M2CLIMA: Option to set 2D momentum climatology with analytical expressions.; variable = ubarclm, vbarclm; required = M2CLIMATOLOGY; related = M2CLM_NUDGING, UV_TIDES; routine = analytical.F (ana_m2clima)

ANA_M2OBC: Option to set 2D momentum open boundary conditions using analytical expressions.; variable = ubar_east, ubar_north, ubar_south, ubar_west; variable = vbar_east, vbar_north, vbar_south, vbar_west; required = OBC; routine = analytical.F (ana_m2obc)

ANA_M3CLIMA: Option to set 3D momentum climatology with analytical expressions.; variable = uclm, vclm; parent = SOLVE3D; required = M3CLIMATOLOGY; related = M3CLM_NUDGING; routine = analytical.F (ana_m3clima)

ANA_M3OBC: Option to set 3D momentum open boundary conditions using analytical expressions.; variable = u_east, u_north, u_south, u_west; variable = v_east, v_north, v_south, v_west; required = OBC; routine = analytical.F (ana_m3obc)

ANA_MASK: Option to set land/sea masking using the analytical set-up. It is used in few idealized test problems. The mask has a value of zero over land and unity over water.; variables = pmask, rmask, umask, vmask; routine = analytical.F (ana_mask)

ANA_PAIR: Option to set surface air pressure with an analytical expression.; variable = Pair; required = BULK_FLUXES, ECOSIM; routine = analytical.F (ana_pair)

ANA_PASSIVE: Option to set inert, passive tracers initial conditions with analytical expressions.; variable = t(:,:,:,:,inert(1:NPT)); parent = SOLVE3D; required = T_PASSIVE; routine = analytical.F (ana_passive)

ANA_PERTURB: Option to perturb tangent linear and adjoint state initial conditions at specified spatial (i,j,k) location. This is used to determine the correctness of the tangent linear and adjoint models by computing the inner product at the specified location. This inner product must be symmetric within roundoff (A - A^T = 0).; parameter = user(1:8); parent = ADJOINT, TANGENT; required = SANITY_CHECK; related = INNER_PRODUCT; routine = analytical.F (ana_perturb)

ANA_PSOURCE: Option to set point sources and sinks with analytical expressions. Usually, river runoff are represented as a point source.; variable = Isrc, Jsrc, Lsrc, Dsrc; variable = Qbar, Qshape, Qsrc, Tsrc; required = Q_PSOURCE, TS_PSOURCE, UV_PSOURCE; routine = analytical.F (ana_psource)

ANA_RAIN: Option to set rain fall rate with an analytical expression.; variable = rain; required = BULK_FLUXES; related = EMINUSP; routine = analytical.F (ana_rain)

ANA_SEDIMENT: Option to set cohesive and non-cohesive sediment initial conditions with analytical expressions. It also initializes sediment bed layer properties (thickness, age, porosity), sediment fraction and mass of each size class in each bed layer, and exposed sediment layer properties (mean grain diameter, mean grain density, mean settling velocity, mean critical erosion stress, ripple length and height, bed wave excursion amplitude, and several bottom roughnesses).; variable = t(:,:,:,:,idsed(1:NST)); variable = bed, bed_frac, bed_mass, bottom; parent = SOLVE3D; required = SEDIMENT; related = BBL_MODEL, SED_BIODIFF; routine = analytical.F (ana_sediment)

ANA_SMFLUX: Option to set kinematic, surface momentum flux boundary condition (wind stress) with analytical expressions.; variable = sustr, svstr; routine = analytical.F (ana_smflux)

ANA_SPFLUX: Option to set passive tracers surface flux with analytical expressions (usually zero, no flux).; variable = stflx(:,:,NAT+1:NT(ng)); related = BIOLOGY, SEDIMENT; routine = analytical.F (ana_spflux)

ANA_SPINNING: Option to set time-variable rotation force as the sum of Coriolis and centripetal accelerations. This option is used in polar coordinates (annulus grid) applications.; variable = f, fomn; related = LAB_CANYON; routine = analytical.F (ana_spinning)

ALBEDO: Option to set kinematic, surface solar shortwave radiation flux with an analytical expression.; variable = srflx; related = ALBEDO, DIURNAL_SRFLUX; routine = analytical.F (ana_srflux)

ANA_SSFLUX: Option to set kinematic surface freshwater flux (E-P) using an analytical expression.; variable = stflx(:,:,isalt); parent = SOLVE3D; related = ANA_SPFLUX, ANA_STFLUX; conflict = EMINUSP; routine =

ANA_SSH: Option to set sea surface height climatology with an analytical expression.; variable = ssh; required = ZCLIMATOLOGY; routine = analytical.F (ana_ssh)

ANA_SSS: Option to set sea surface salinity with an analytical expression.; variable = sss; required = SALINITY; related = SCORRECTION, SRELAXATION; routine = analytical.F (ana_sss)

ANA_SST: Option to set sea surface temperature with an analytical expression. It also sets surface net heat flux sensitivity to sea surface temperature. Both fields are used for surface net heat flux correction.; variable = dqdt, sst; related = QCORRECTION; routine = analytical.F (ana_sst), set_vbc.F

ANA_STFLUX: Option to set kinematic surface net flux of tracers using analytical expressions.; variable = stflx(:,:,1:NT); parent = SOLVE3D; related = ANA_SPFLUX, ANA_SSFLUX; conflict =; routine =

ANA_TAIR: Option to set surface air temperature with an analytical expression; variable = Tair; parent = SOLVE3D; required = ALBEDO, BULK_FLUXES, ECOSIM; related = ANA_SRFLUX; routine = analytical.F (ana_tair)

ANA_TCLIMA: Option to set tracer climatology with analytical expressions.; variable = tclm; parent = SOLVE3D; required = TCLIMATOLOGY; related = TCLM_NUDGING; routine = analytical.F (ana_tclima)

ANA_TOBC: Option to set tracers open boundary conditions using analytical expressions.; variable = t_east, t_north, t_south, t_west; required = OBC; routine = analytical.F (ana_tobc)

ANA_VMIX: Option to set vertical mixing coefficients for momentum and tracers with analytical expressions.; variable = Akt(:,:,:,1:NAT), Akv; parent = SOLVE3D; conflict = BVF_MIXING, GLS_MIXING, LMD_MIXING, MY25_MIXING; routine = analytical.F (ana_vmix)

ANA_WINDS: Option to set surface wind vector components with analytical expressions.; variable = Uwind, Vwind; required = BULK_FLUXES, ECOSIM; routine = analytical.F (ana_winds)

ANA_WWAVE: Option to set wind-induced wave fields with analytical expressions. It currently, sets values for wave direction, height, length, top and bottom periods, and dissipation.; variable = Dwave, Hwave, Lwave, Pwave_top, Pwave_bot, wave_dissip; required = BBL_MODEL; related = WAVES_HEIGHT, WAVES_LENGTH, WAVES_TOP_PERIOD, WAVES_BOT_PERIOD; related = TKE_WAVEDISS; routine = analytical.F (ana_wwave)

ASSIMILATION: Internal option defined when any of the optimal interpolation assimilation options is activated.; related = ASSIMILATION_SSH, ASSIMILATION_SST, ASSIMILATION_T, ASSIMILATION_UV, ASSIMILATION_UVsur; conflict = NUDGING, IS4DVAR, S4DVAR, W4DPSAS, W4DVAR; routine = globaldefs.h

ASSIMILATION_SSH: Option to assimilate sea surface height observations (altimetry) using optimal interpolation.; variable = EdatSSH, EobsSSH, SSHdat, SSHobs; parent = ASSIMILATION; related = ASSIMILATION_SST, ASSIMILATION_T, ASSIMILATION_UV, ASSIMILATION_UVsur; conflict = NUDGING_SSH; routine = oi_update.F

ASSIMILATION_SST: Option to assimilate sea surface temperature observations using optimal interpolation.; variable = EdatSST, EobsSST, SSTdat, SSTobs; parent = ASSIMILATION; related = ASSIMILATION_SSH, ASSIMILATION_T, ASSIMILATION_UV, ASSIMILATION_UVsur; conflict = NUDGING_SST; routine = oi_update.F

ASSIMILATION_T: Option to assimilate tracer-type observations (temperature, salinity) using optimal interpolation.; variable = EdatT, EobsT, Tdat, Tobs; parent = ASSIMILATION; related = ASSIMILATION_SSH, ASSIMILATION_SST, ASSIMILATION_UV, ASSIMILATION_UVsur; conflict = NUDGING_T; routine = oi_update.F

ASSIMILATION_UV: Option to assimilate 3D momentum (u,v) observations using optimal interpolation.; variable = EdatUV, EobsUV, UVdat, UVobs; parent = ASSIMILATION; related = ASSIMILATION_SSH, ASSIMILATION_SST, ASSIMILATION_T, ASSIMILATION_UVsur; conflict = NUDGING_UV; routine = oi_update.F

ASSIMILATION_UVsur: Option to assimilate surface momentum (u,v) observations (CODAR) using optimal interpolation.; variable = EdatVsur, EobsVsur, Usurdat, Usur, Vsurdat, Vsur; parent = ASSIMILATION; related = ASSIMILATION_SSH, ASSIMILATION_SST, ASSIMILATION_T, ASSIMILATION_UV; conflict = NUDGING_UVsur; routine = oi_update.F

ASSUMED_SHAPE: Internal option to declare all global arrays as assumed-shape where their size, bounds, and shape are associated with pointers. Imported arrays with dummy arguments that takes the shape of the actual argument passes to it. If not activated, all the arrays are of explicit-shape. In some computers the explicit-shape arrays slow doen performace because the arrays are copied when passed as argument.; routine = globaldefs.h

AVERAGES: Option to write out time-averaged fields into output NetCDF file.; parameter = nAVG, ndefAVG, ntsAVG; related = AVERAGES_AKS, AVERAGES_AKT, AVERAGES_AKV, AVERAGES_BEDLOAD, AVERAGES_FLUXES, AVERAGES_NEARSHORE, AVERAGES_QUADRATIC; routine = def_avg.F, set_avg.F, wrt_AVG.F

AVERAGES_AKS: Option to write out time-averaged vertical diffusion of salinity into output NetCDF file. Use this option when any of the vertical mixing parameterizations is activated.; parameter = nAVG, ndefAVG, ntsAVG; parent = AVERAGES; required = AVERAGES; related = AVERAGES_AKT, AVERAGES_AKV, AVERAGES_BEDLOAD, AVERAGES_FLUXES, AVERAGES_NEARSHORE, AVERAGES_QUADRATIC; routine = def_avg.F, set_avg.F, wrt_AVG.F

AVERAGES_AKT: Option to write out time-averaged vertical diffusion of temperature into output NetCDF file. Use this option when any of the vertical mixing parameterizations is activated.; parameter = nAVG, ndefAVG, ntsAVG; parent = AVERAGES; required = AVERAGES; related = AVERAGES_AKS, AVERAGES_AKV, AVERAGES_BEDLOAD, AVERAGES_FLUXES, AVERAGES_NEARSHORE, AVERAGES_QUADRATIC; routine = def_avg.F, set_avg.F, wrt_AVG.F

AVERAGES_AKV: Option to write out time-averaged vertical viscosity into output NetCDF file. Use this option when any of the vertical mixing parameterizations is activated.; parameter = nAVG, ndefAVG, ntsAVG; parent = AVERAGES; required = AVERAGES; related = AVERAGES_AKS, AVERAGES_AKT, AVERAGES_BEDLOAD, AVERAGES_FLUXES, AVERAGES_NEARSHORE, AVERAGES_QUADRATIC; routine = def_avg.F, set_avg.F, wrt_AVG.F

AVERAGES_BEDLOAD: Option to write out time-averaged bed load components into output NetCDF file.; parameter = nAVG, ndefAVG, ntsAVG; parent = AVERAGES; required = AVERAGES, BEDLOAD, SEDIMENT; related = AVERAGES_AKS, AVERAGES_AKT, AVERAGES_AKV, AVERAGES_FLUXES, AVERAGES_NEARSHORE, AVERAGES_QUADRATIC; routine = def_avg.F, set_avg.F, wrt_AVG.F

AVERAGES_FLUXES: Option to write out time-averaged surface momentum stress and several fields associated with surface heat and freshwater fluxes.; parameter = nAVG, ndefAVG, ntsAVG; parent = AVERAGES; required = AVERAGES; related = AVERAGES_AKS, AVERAGES_AKT, AVERAGES_AKV, AVERAGES_BEDLOAD, AVERAGES_NEARSHORE, AVERAGES_QUADRATIC, BULK_FLUXES; routine = def_avg.F, set_avg.F, wrt_AVG.F

AVERAGES_NEARSHORE: Option to write out time-averaged nearshore stresses variables.; parameter = nAVG, ndefAVG, ntsAVG; parent = AVERAGES; required = AVERAGES, NEARSHORE_MELLOR; related = AVERAGES_AKS, AVERAGES_AKT, AVERAGES_AKV, AVERAGES_BEDLOAD, AVERAGES_FLUXES, AVERAGES_QUADRATIC; routine = def_avg.F, set_avg.F, wrt_AVG.F

AVERAGES_QUADRATIC: Option to write out time-averaged variables needed to compute eddy fluxes. These quadratic variables include <H u / n>, <H v / m>, <H u T / n>, <H v T / m>, <T T>, <u T>, <v T>, <u u>, <v v>, <ubar ubar>, <vbar vbar>, and <zeta zeta>.; parameter = nAVG, ndefAVG, ntsAVG; parent = AVERAGES; required = AVERAGES; related = AVERAGES_AKS, AVERAGES_AKT, AVERAGES_AKV, AVERAGES_BEDLOAD, AVERAGES_FLUXES, AVERAGES_NEARSHORE; routine = def_avg.F, set_avg.F, wrt_AVG.F

A4DVAR_TOY: Idealized data assimilation example to run 4DVar weak constraint data assimilation algorithms.; parameter = Ninner, Nouter; required = W4DPSAS or W4DVAR; related = CONVOLVE, RPM_RELAXATION; routine = s4dvar.in, w4dpsas_ocean, w4dvar_ocean.h

B

BACKGROUND: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BALANCE_OPERATOR: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BASIN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BEDLOAD: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BENCHMARK1: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BENCHMARK2: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BENCHMARK3: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BIOLOGY: Internal option defined when any of the biological models is activated.; related = BIO_FASHAM, ECOSIM, NEMURO, NPZD_FRANKS, NPZD_POWELL; routine = biology.F

BIO_FASHAM: Option to activate Fasham-type, nitrogen-based biological model (Fasham et al., 1990; Fennel et al., 2006); related = ANA_BIOLOGY, ANA_BPFLUX, ANA_SPFLUX, BIO_SEDIMENT, CARBON, DENITRIFICATION, DIAGNOSTICS_BIO, OXYGEN, TALK_PROGNOSTIC; conflict = ECOSIM, NEMURO, NPZD_FRANKS, NPZD_POWELL; routine = fasham.h; input = bioFasham.in

BIO_SEDIMENT: Option to restore fallen particulate material to the nutrient pool in Fasham-type model.; parent = BIO_FASHAM; routine = fasham.h

BIO_TOY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BL_TEST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BODYFORCE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BULK_FLUXES: Option to; parameter =; parent =; required =; related =; conflict =; routine =

BVF_MIXING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

C

CANUTO_A: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CANUTO_B: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CANYON: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CARBON: Option to include carbon constituents in Fasham-type biological model. Currently, four carbon-based tracer are added to include large detritus (iLDeC), small detritus (iSDeC), total inorganic carbon (iTIC_), and total alkalinity (iTAlk).; parent = BIO_FASHAM; required = OXYGEN; routine = fasham.h

CELERITY_READ: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CELERITY_WRITE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CHARNOK: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CHECKPOINTING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CLOUDS: Internal option indicating that cloud data is needed.; required = ALBEDO, ECOSIM, LONGWAVE; related = BULK_FLUXES, ANA_SRFLUX; routine = globaldefs.h

CONVOLUTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CONVOLVE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

COOL_SKIN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

COUPLING_TEST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CORRELATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

COSINE2: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CRAIG_BANNER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

CURVGRID: Option to; parameter =; parent =; required =; related =; conflict =; routine =

D

DAMEE_4: Option to; parameter =; parent =; required =; related =; conflict =; routine =

DEBUGGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

DENITRIFICATION: Option to include denitrification processes in Fasham-type biological model.; parent = BIO_FASHAM; routine = fasham.h

DIAGNOSTICS: Internal option to compute and write balance term diagnostics for tracers and momentum.; related = DIAGNOSTICS_BIO, DIAGNOSTICS_TS, DIAGNOSTICS_UV; routine = set_diags.F, wrt_diags.F

DIAGNOSTICS_BIO: Option to compute and write biological diagnostic terms in Fasham-type model.; parent = BIO_FASHAM; related = DIAGNOSTICS_TS, DIAGNOSTICS_UV; routine = fasham.h, wrt_diags.F

DIAGNOSTICS_TS: Option to compute and write diagnostic terms for tracer equations balances.; related = DIAGNOSTICS_BIO, DIAGNOSTICS_UV; routine = set_diags.F, step3d_t.F, wrt_diags.F

DIAGNOSTICS_UV: Option to compute and write diagnostic terms for momentum equations balances.; related = DIAGNOSTICS_BIO, DIAGNOSTICS_TS; routine = set_diags.F, step2d.F, step3d_t.F, wrt_diags.F

DIFF_GRID: Option to; parameter =; parent =; required =; related =; conflict =; routine =

DIURNAL_SRFLUX: Option to; parameter =; parent =; required =; related =; conflict =; routine =

DJ_GRADPS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

DOUBLE_GYRE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

DOUBLE_PRECISION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

E

EAST_FSCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_FSCHAPMAN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_FSGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_FSNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_FSRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M2CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M2FLATHER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M2GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M2NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M2RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M2REDUCED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M3CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M3GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M3NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_M3RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_KGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_KRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_TCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_TGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_TNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_TRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EAST_VOLCONS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EASTERN_WALL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

ECOSIM: Option to activate Bio-optical EcoSim (Bissett et al., 1999a, b) model.; related = ANA_BIOLOGY, ANA_BPFLUX, ANA_SPFLUX; conflict = BIO_FASHAM, NEMURO, NPZD_FRANKS, NPZD_POWELL; routine = ecosim.h; input = ecosim.in

EMINUSP: Option to; parameter =; parent =; required =; related =; conflict =; routine =

ENSEMBLE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

ENERGY1_NORM: Option to; parameter =; parent =; required =; related =; conflict =; routine =

ENERGY2_NORM: Option to; parameter =; parent =; required =; related =; conflict =; routine =

ENERGY3_NORM: Option to; parameter =; parent =; required =; related =; conflict =; routine =

ESTUARY_TEST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

EW_PERIODIC: Option to; parameter =; parent =; required =; related =; conflict =; routine =

F

FLOATS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FLOAT_VWALK: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FLT_TEST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FORCING_SV: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FORWARD_MIXING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FORWARD_READ: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FORWARD_RHS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FORWARD_WRITE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FSOBC_REDUCED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FT_EIGENMODES: Option to; parameter =; parent =; required =; related =; conflict =; routine =

FULL_GRID: Option to; parameter =; parent =; required =; related =; conflict =; routine =

G

GLS_MIXING: Option to activate Generic Length Scale vertical mixing parameterization (Warner et al., 2005).; related = CANUTO_A, CANUTO_B; conflict = MY25_MIXING, LMD_MIXING; routine = gls_corstep.F, gls_prestep.F, ocean.in

GRADIENT_CHECK: Option to; parameter =; parent =; required =; related =; conflict =; routine =

GRAV_ADJ: Option to; parameter =; parent =; required =; related =; conflict =; routine =

H

I

ICESHELF: Option to; parameter =; parent =; required =; related =; conflict =; routine =

IMPLICIT_VCONV: Option to; parameter =; parent =; required =; related =; conflict =; routine =

IOM: Option to; parameter =; parent =; required =; related =; conflict =; routine =

IMPULSE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

INLINE_2DIO: Option to; parameter =; parent =; required =; related =; conflict =; routine =

INNER_PRODUCT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

IS4DVAR: Option to; parameter =; parent =; required =; related =; conflict =; routine =

J

K

KANTHA_CLAYSON: Option to; parameter =; parent =; required =; related =; conflict =; routine =

KELVIN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

K_C2ADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

K_C4ADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

L

LAB_CANYON: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LAKE_SIGNELL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_BKPP: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_CONVEC: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_DDMIX: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_MIXING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_NONLOCAL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_RIMIX: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_SKPP: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LMD_TEST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LONGWAVE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

LONGWAVE_OUT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

M

MAX_SLOPE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MIN_STRAT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

M2CLIMATOLOGY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

M2CLM_NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

M3CLIMATOLOGY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

M3CLM_NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MASKING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MB_BBL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MB_CALC_ZNOT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MB_ZOBIO: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MB_Z0BL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MB_Z0RIP: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MIX_ISO_TS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MIX_ISO_TS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MIX_S_TS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MIX_GEO_UV: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MIX_S_UV: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MPI: Option to; parameter =; parent =; required =; related =; conflict =; routine =

MY25_MIXING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

N

NEMURO: Option to activate NEMURO model.; related = ANA_BIOLOGY, ANA_BPFLUX, ANA_SPFLUX; conflict = BIO_FASHAM, ECOSIM, NPZD_FRANKS, NPZD_POWELL; routine = nemuro.h; input = nemuro.in

NLM_OUTER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NONLINEAR: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NONLIN_EOS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_FSCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_FSCHAPMAN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_FSGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_FSNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_FSRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M2CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M2FLATHER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M2GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M2NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M2RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M2REDUCED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M3CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M3GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M3NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_M3RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_KGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_KRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_TCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_TGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_TNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_TRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTH_VOLCONS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NORTHERN_WALL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NO_WRITE_GRID: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NPZD_FRANKS: Option to activate Franks et al. (1986) NPZD biological model.; related = ANA_BIOLOGY, ANA_BPFLUX, ANA_SPFLUX; conflict = BIO_FASHAM, ECOSIM, NEMURO, NPZD_POWELL; routine = npzd_Franks.h; input = npzd_Franks.in

NPZD_POWELL: Option to activate Powell et al. (2006) NPZD biological model.; related = ANA_BIOLOGY, ANA_BPFLUX, ANA_SPFLUX; conflict = BIO_FASHAM, ECOSIM, NEMURO, NPZD_FRANKS; routine = npzd_Powell.h; input = npzd_Powell.in

NS_PERIODIC: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NUDGING_SSH: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NUDGING_SST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NUDGING_T: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NUDGING_UV: Option to; parameter =; parent =; required =; related =; conflict =; routine =

NUDGING_UVsur: Option to; parameter =; parent =; required =; related =; conflict =; routine =

N2NORM_PROFILE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

N2S2_HORAVG: Option to; parameter =; parent =; required =; related =; conflict =; routine =

O

OBC: Internal option indicating open boundary conditions.; related = EAST_FSOBC, EAST_M2OBC, EAST_M3OBC, EAST_TOBC; related = WEST_FSOBC, WEST_M2OBC, WEST_M3OBC, WEST_TOBC; related = NORTH_FSOBC, NORTH_M2OBC, NORTH_M3OBC, NORTH_TOBC; related = SOUTH_FSOBC, SOUTH_M2OBC, SOUTH_M3OBC, SOUTH_TOBC; routine = globaldefs.h

OBSERVATIONS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

OCMIP_OXYGEN_SC: Option to use the Keeling et al. (1998) formulae for the Schmit number to model O₂ gas exchange. If deactivated, the formulation of Wanninkhof (1992) is used instead.; parent = BIO_FASHAM; required = OXYGEN; routine = fasham.h

OPT_OBSERVATIONS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

OPT_PERTURBATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

OUT_DOUBLE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

OVERFLOW: Option to; parameter =; parent =; required =; related =; conflict =; routine =

OXYGEN: Option to include oxygen dynamics in Fasham-type biological model. Currently, an additional tracer is added for dissolved oxygen concentration (iOxyg).; parent = BIO_FASHAM; routine = fasham.h

_OPENMP: Option to; parameter =; parent =; required =; related =; conflict =; routine =

P

PERFECT_RESTART: Option to; parameter =; parent =; required =; related =; conflict =; routine =

PICARD_TEST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

PJ_GRADP: Option to; parameter =; parent =; required =; related =; conflict =; routine =

PJ_GRADPQ2: Option to; parameter =; parent =; required =; related =; conflict =; routine =

PJ_GRADPQ4: Option to; parameter =; parent =; required =; related =; conflict =; routine =

POWER_LAW: Option to; parameter =; parent =; required =; related =; conflict =; routine =

PROFILE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

PSEUDOSPECTRA: Option to; parameter =; parent =; required =; related =; conflict =; routine =

Q

QCORRECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

Q_PSOURCE: Option to activate/deactivate point sources/sinks of momentum. This option is used to specify the mass transport in the vertical, such as precipitation or groundwater discharge.; variable = Dsrc(1:Nsrc), Qsrc(1:Nsrc,k); related = ANA_PSOURCE, TS_PSOURCE; confict =; routine = step2d.F, step3d_uv.F

R

RADIATION_2D: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RAMP_TIDES: Option to; parameter =; parent =; required =; related =; conflict =; routine =

READ_WATER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RIVERPLUME1: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RIVERPLUME2: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RIVER_BIOLOGY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RIVER_SEDIMENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RI_HORAVG: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RI_VERAVG: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RHO_SURF: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RPM_DRIVER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

RST_SINGLE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

R_SYMMETRY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

S

SALINITY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SANITY_CHECK: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SCORRECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SEAMOUNT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SEDIMENT: Option to activate cohesive and non-cohesive sediment model (Warner et al., 2006).; related = ANA_BPFLUX, ANA_SEDIMENT, ANA_SPFLUX; related = BEDLOAD, RIVER_SEDIMENT, SED_DENS, SED_MORPH, SUSPLOAD; routine = sediment.F, sediment.in

SED_DENS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SED_MORPH: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SED_TEST1: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SED_TOY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SG_BBL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SG_CALC_SNOT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SG_LOGINT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOLAR_SOURCE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOLITON: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOLVE3D: Option to activate/deactivate 3D model configuration. If activated, ROMS solves 3D (baroclinic) primitive equations. If deactivated, ROMS solves vertically-integrated, shallow water (barotropic) equations.; routine = main2d.F, main3d.F

SOUTH_FSCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_FSCHAPMAN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_FSGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_FSNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_FSRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M2CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M2FLATHER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M2GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M2NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M2RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M2REDUCED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M3CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M3GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M3NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_M3RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_KGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_KRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_TCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_TGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_TNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_TRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTH_VOLCONS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SOUTHERN_WALL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SO_SEMI: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SO_SEMI_WHITE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SO_TRACE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SPLINES: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SPHERICAL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SPONGE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SRELAXATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SSH_TIDES: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SSW_BBL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SSW_CALC_ZNOT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SSW_LOGINT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

STATIONS: Option to activate writing out station data; parameter =; parent =; required =; related =; conflict =; routine = stations.in

STATIONS_CGRID: Option to; parameter =; parent =; required =; related =; conflict =; routine =

STOCHASTIC_OPT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

SUSPLOAD: Option to; parameter =; parent =; required =; related =; conflict =; routine =

S4DVAR: Option to; parameter =; parent =; required =; related =; conflict =; routine =

T

TALK_PROGNOSTIC: Option to activate prognostic computation of alkalinity.; parent = BIO_FASHAM; required = CARBON; routine = fasham.h

TANGENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TCLIMATOLOGY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TCLM_NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TKE_DIF2: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TKE_DIF4: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TLM_CHECK: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TLM_DRIVER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

THREE_GHOST: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TL_IOMS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_MPDATA: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_A4HADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_A4VADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_C2HADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_C2VADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_C4HADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_C4VADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_DIF2: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_DIF4: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_FIXED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_PSOURCE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_SVADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

TS_U3HADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

T_PASSIVE: Option to; parameter =; parent =; required =; related =; conflict =; routine =

U

UPWELLING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

UV_ADV: Option to activate/deactivate horizontal and vertical advection of momentum. If no additional options are specified, the default is to discretize the horizontal momentum with a third-order upstream bias advection scheme with velocity dependent hyper-viscosity and the vertical momentum with a fourth-order, centered differences scheme. Since there is some implicit viscosity associated with the default discretization, the user may avoid adding an explicity vicosity to the solution to suppress excisive smoothing.; routine = step2d.F, rhs3d.F

UV_BAROCLINIC: Option to; parameter =; parent =; required =; related =; conflict =; routine =

UV_COR: Option to activate/deactivate Coriolis acceleration term in momentum equations.; routine = step2d.F, rhs3d.F

UV_C2ADVECTION: Option to use second-order, centered, finite differences in advection of momentum.; parent = UV_ADV; conflit = UV_C4ADVECTION

UV_C4ADVECTION: Option to use fourth-order, centered, finite differences in advection of momentum.; parent = UV_ADV; conflit = UV_C2ADVECTION

UV_LDRAG: Option to activate/deactivate linear bottom friction of momentum.; parameter = rdrg(ng); confict = BBL_MODEL, UV_LOGDRAG, UV_QDRAG; routine = set_vbc.F

UV_LOGDRAG: Option to activate/deactivate logarithmic bottom friction of momentum.; parameter = Zob(ng); required = SOLVE3D; confict = BBL_MODEL, UV_LDRAG, UV_QDRAG; routine = set_vbc.F

UV_PSOURCE: Option to activate/deactivate point sources/sinks of momentum. This option is used to specify the mass transport in river runoff.; variable = Dsrc(1:Nsrc), Qsrc(1:Nsrc,k); related = ANA_PSOURCE, TS_PSOURCE; confict = BBL_MODEL, UV_LOGDRAG, UV_QDRAG; routine = step2d.F, step3d_uv.F

UV_QDRAG: Option to activate/deactivate quadratic bottom friction of momentum.; parameter = rdrg2(ng); confict = BBL_MODEL, UV_LDRAG, UV_LOGDRAG; routine = set_vbc.F

UV_SADVECTION: Option to use conservative, parabolic splines discretization of momentum vertical advection. This scheme requires high vertical resolution so it is recommended to use this option in shallow, coastal applications.; parent = UV_ADV; conflit = UV_C2ADVECTION, UV_C4ADVECTION

UV_TIDES: Option to; parameter =; parent =; required =; related =; conflict =; routine =

UV_U3HADVECTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

UV_VIS2: Option to activate/deactivate horizontal, harmonic viscosity of momentum. The hamonic mixing of momentum can be applied along terrain-following or geopotential levels. In ROMS, the viscosity is derived from the horizontal divergence of the deviatory stress tensor (Wajsowicz, 1993).; parameter = visc2(ng); variable = visc2_p(:,:), visc2_r(:,:); required = MIX_S_UV, MIX_GEO_UV; related = VISC_GRID; routine = uv3dmix2_s.h, uv3dmix2_geo.h, uv3dmix.F

UV_VIS4: Option to activate/deactivate horizontal, biharmonic viscosity of momentum. The bihamonic mixing of momentum can be applied along terrain-following or geopotential levels. In ROMS, the viscosity is derived from the horizontal divergence of the deviatory stress tensor (Wajsowicz, 1993).; parameter = visc4(ng); variable = visc4_p(:,:), visc4_r(:,:); required = MIX_S_UV, MIX_GEO_UV; related = VISC_GRID; routine = uv3dmix4_s.h, uv3dmix4_geo.h, uv3dmix.F

V

VAR_RHO_2D: Option to; parameter =; parent =; required =; related =; conflict =; routine =

VCONVOLUTION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

VERIFICATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

VISC_GRID: Option to; parameter =; parent =; required =; related =; conflict =; routine =

W

WEAK_CONSTRAINT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEDDELL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_FSCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_FSCHAPMAN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_FSGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_FSNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_FSRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M2CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M2FLATHER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M2GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M2NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M2RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M2REDUCED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M3CLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M3GRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M3NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_M3RADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_KGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_KRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_TCLAMPED: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_TGRADIENT: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_TNUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_TRADIATION: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WEST_VOLCONS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WESTERN_WALL: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WET_DRY: Option to activate wetting and drying.; parameter = Dcrit; variable = rmask_wet, umask_wet, vmask_wet; routine = step2d.F

WINDBASIN: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WIND_WAVES: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WJ_GRADP: Option to; parameter =; parent =; required =; related =; conflict =; routine =

WRITE_WATER: Option to; parameter =; parent =; required =; related =; conflict =; routine =

W4DPSAS: Option to; parameter =; parent =; required =; related =; conflict =; routine =

W4DVAR: Option to; parameter =; parent =; required =; related =; conflict =; routine =

X

Y

Z

ZCLIMATOLOGY: Option to; parameter =; parent =; required =; related =; conflict =; routine =

ZCLM_NUDGING: Option to; parameter =; parent =; required =; related =; conflict =; routine =

@@ Line 2,037: / Line 2,037: @@
 ==<span class="alphabet">P</span>==
+<section begin=PERFECT_RESTART />;<span id="PICARD_TEST"></span>[[PERFECT_RESTART]]
+:Option to
+:'''parameter = '''
+:'''parent = '''
+:'''required = '''
+:'''related = '''
+:'''conflict = '''
+:'''routine = '''  <section end=PICARD_TEST />
 <section begin=PICARD_TEST />;<span id="PICARD_TEST"></span>[[PICARD_TEST]]

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Revision as of 12:21, 15 April 2008

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