Difference between revisions of "Bibliography"

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=='''A'''==
=='''A'''==


Allen, S. E., M. S. Dinniman, J. M. Klinck, B. M. Hickey, D. D. Gorby, A. J. Hewett, 2003: On vertical advection truncation errors in terrain following numerical models: Comparison to a laboratory model for upwelling over submarine canyons, ''J. Geophys. Res.'', '''108''' (C1), 1-16, doi:10.1029/2001JC000978. ([http://marine.rutgers.edu/po/Papers/Allen_JGR_2001JC000978.pdf PDF])
<span id="AllenSE_2003a"></span>Allen, S. E., M. S. Dinniman, J. M. Klinck, B. M. Hickey, D. D. Gorby, A. J. Hewett, 2003: On vertical advection truncation errors in terrain following numerical models: Comparison to a laboratory model for upwelling over submarine canyons, ''J. Geophys. Res.'', '''108''' (C1), 1-16, doi:10.1029/2001JC000978. ([http://marine.rutgers.edu/po/Papers/Allen_JGR_2001JC000978.pdf PDF])


Arakawa, A. and V. R. Lamb, 1977: ''Methods of computational physics'', Academic Press, 174-265.
<span id="ArakawaA_1977a"></span>Arakawa, A. and V. R. Lamb, 1977: ''Methods of computational physics'', Academic Press, 174-265.


Arango, H. G., A. M. Moore, A. J. Miller, B. D. Cornuelle, E. Di Lorenzo, and D. J. Neilson, 2003: The ROMS Tangent Linear and Adjoint Models: A comprehensive ocean prediction and analysis system, ''IMCS Technical Reports, Rutgers Univeristy'', 69pp. ([http://marine.rutgers.edu/po/Papers/roms_adjoint.pdf PDF])
<span id="ArangoHG_2003a"></span>Arango, H. G., A. M. Moore, A. J. Miller, B. D. Cornuelle, E. Di Lorenzo, and D. J. Neilson, 2003: The ROMS Tangent Linear and Adjoint Models: A comprehensive ocean prediction and analysis system, ''IMCS Technical Reports, Rutgers Univeristy'', 69pp. ([http://marine.rutgers.edu/po/Papers/roms_adjoint.pdf PDF])


=='''B'''==
=='''B'''==


Budgell, W.P., 2005: Numerical simulation of ice-ocean variability in the Barents Sea region, ''Ocean Dynamics'', DOI 10.1007/s10236-005-0008-3. ([http://marine.rutgers.edu/po/Papers/Budgell_od.pdf PDF])
<span id="BudgellWP_2005a"></span>Budgell, W.P., 2005: Numerical simulation of ice-ocean variability in the Barents Sea region, ''Ocean Dynamics'', DOI 10.1007/s10236-005-0008-3. ([http://marine.rutgers.edu/po/Papers/Budgell_od.pdf PDF])


=='''C'''==
=='''C'''==


Canuto, V. M., A. Howard, Y. Cheng, M. S. Dubovikov, 2001: Ocean turbulence I: one-point closure model. Momentum and heat vertical diffusivities, ''J. Phys. Oceanogr.'', '''31''', 1413-1426.
<span id="CanutoVM_2001a"></span>Canuto, V. M., A. Howard, Y. Cheng, M. S. Dubovikov, 2001: Ocean turbulence I: one-point closure model. Momentum and heat vertical diffusivities, ''J. Phys. Oceanogr.'', '''31''', 1413-1426.


Chapman, S. J., 2004: ''Fortan 90/95 for Scientists and Engineers''. Second Edition. McGraw-Hill. 814 pp.
<span id="ChapmanSJ_2004a"></span>Chapman, S. J., 2004: ''Fortan 90/95 for Scientists and Engineers''. Second Edition. McGraw-Hill. 814 pp.


Chassignet, E. P., H. G. Arango, D. Dietrich, T. Ezer, M. Ghil, D. B. Haidvogel C.-C. Ma, A. Mehra, A. M. Paiva, Z. Sirkes, 2000: DAMEE-NAB: The Base Experiments, ''Dyn. Atmos. Oceans'', '''32''', 155-183.  ([http://marine.rutgers.edu/po/Papers/damee_rev.pdf PDF])
<span id="ChassignetEP_2000a"></span>Chassignet, E. P., H. G. Arango, D. Dietrich, T. Ezer, M. Ghil, D. B. Haidvogel C.-C. Ma, A. Mehra, A. M. Paiva, Z. Sirkes, 2000: DAMEE-NAB: The Base Experiments, ''Dyn. Atmos. Oceans'', '''32''', 155-183.  ([http://marine.rutgers.edu/po/Papers/damee_rev.pdf PDF])


Chua, B. S. and A. F. Bennett, 2001: An inverse ocean modeling system, ''Ocean Modelling'', '''3''', 137-165. ([http://marine.rutgers.edu/po/Papers/ioms_oc.pdf PDF])
<span id="ChuaBS_2001a"></span>Chua, B. S. and A. F. Bennett, 2001: An inverse ocean modeling system, ''Ocean Modelling'', '''3''', 137-165. ([http://marine.rutgers.edu/po/Papers/ioms_oc.pdf PDF])


=='''D'''==
=='''D'''==


Di Lorenzo, E., 2003: Seasonal dynamics of the surface circulation in the southern California Current System, ''Deep-Sea Res., Part II'', '''50''', 2371-2388.
<span id="DiLorenzoE_2003a"></span>Di Lorenzo, E., 2003: Seasonal dynamics of the surface circulation in the southern California Current System, ''Deep-Sea Res., Part II'', '''50''', 2371-2388.


Dinniman, M. S. and J. M. Klinck, 2002: The influence of open versus periodic alongshore boundaries on circulations near submarine canyons, ''J. Atmos. Oceanic Tech.'', '''19''', 1722-1737 ([http://marine.rutgers.edu/po/Papers/Dinniman_jtech02.pdf PDF])
<span id="DinnimanMS_2002a"></span>Dinniman, M. S. and J. M. Klinck, 2002: The influence of open versus periodic alongshore boundaries on circulations near submarine canyons, ''J. Atmos. Oceanic Tech.'', '''19''', 1722-1737 ([http://marine.rutgers.edu/po/Papers/Dinniman_jtech02.pdf PDF])


Dinniman, M. S., J. M. Klinck, and W. O. Smith Jr., 2003: Cross shelf exchange in a model of the Ross Sea circulation and biogeochemistry, ''Deep-Sea Res., Part II'', '''50''', 3103-3120. ([http://marine.rutgers.edu/po/Papers/DSRII1415.pdf PDF])
<span id="DinnimanMS_2003a"></span>Dinniman, M. S., J. M. Klinck, and W. O. Smith Jr., 2003: Cross shelf exchange in a model of the Ross Sea circulation and biogeochemistry, ''Deep-Sea Res., Part II'', '''50''', 3103-3120. ([http://marine.rutgers.edu/po/Papers/DSRII1415.pdf PDF])


Dinniman, M. S. and J. M. Klinck, 2004: A model study of circulation and cross shelf exchange on the west Antarctic Peninsula continental shelf,  ''Deep-Sea Res., Part II'', '''51''', 2003-2022. ([http://marine.rutgers.edu/po/Papers/DSRII1415.pdf PDF])
<span id="DinnimanMS_2004a"></span>Dinniman, M. S. and J. M. Klinck, 2004: A model study of circulation and cross shelf exchange on the west Antarctic Peninsula continental shelf,  ''Deep-Sea Res., Part II'', '''51''', 2003-2022. ([http://marine.rutgers.edu/po/Papers/DSRII1415.pdf PDF])


Durski, S. M., S. M. Glenn, D. B. Haidvogel, 2004: Vertical mixing schemes in the coastal ocean: Comparison of the Level 2.5 Mellor-Yamada scheme with an enhanced version of the K-profile parameterization, ''J. Geophys. Res.'', '''109''', C01015, doi:10.1029/2002JC001702. ([http://marine.rutgers.edu/po/Papers/Durski_JGR04.pdf PDF])
<span id="DurskiSM_2004a"></span>Durski, S. M., S. M. Glenn, D. B. Haidvogel, 2004: Vertical mixing schemes in the coastal ocean: Comparison of the Level 2.5 Mellor-Yamada scheme with an enhanced version of the K-profile parameterization, ''J. Geophys. Res.'', '''109''', C01015, doi:10.1029/2002JC001702. ([http://marine.rutgers.edu/po/Papers/Durski_JGR04.pdf PDF])


=='''E'''==
=='''E'''==


Ezer, T., H. G. Arango and A. F. Shchepetkin, 2002: Developments in terrain-following ocean models: intercomparisons of numerical aspects, ''Ocean Modelling'', '''4''', 249-267. ([http://marine.rutgers.edu/po/Papers/ezer_etal_2002.pdf PDF])
<span id="EzerT_2002a"></span>Ezer, T., H. G. Arango and A. F. Shchepetkin, 2002: Developments in terrain-following ocean models: intercomparisons of numerical aspects, ''Ocean Modelling'', '''4''', 249-267. ([http://marine.rutgers.edu/po/Papers/ezer_etal_2002.pdf PDF])


=='''F'''==
=='''F'''==


Fairall, C. W., E. F. Bradley, D. P. Rogers, J. B. Edson and G. S. Young, 1996: Bulk parameterization of air-sea fluxes for tropical ocean-global atmosphere Coupled-Ocean Atmosphere Response Experiment, ''J. Geophys. Res.'', '''101''', 3747-3764
<span id="FairallCW_1996a"></span>Fairall, C. W., E. F. Bradley, D. P. Rogers, J. B. Edson and G. S. Young, 1996: Bulk parameterization of air-sea fluxes for tropical ocean-global atmosphere Coupled-Ocean Atmosphere Response Experiment, ''J. Geophys. Res.'', '''101''', 3747-3764


Fennel, K., J. Wilkin, J. Levin, J. Moisan, J. O'Reilly, and D. Haidvogel, 2006: Nitrogen cycling in the Middle Atlantic Bight: Results from a three-dimensional model and implications for the North Atlantic nitrogen budget, ''Global Biogeochem. Cycles'', '''20''', GB3007, doi:10.1029/2005GB002456. ([http://marine.rutgers.edu/po/Papers/Fennel_etal_gbc.pdf PDF])  
<span id="FennelK_2006a"></span>Fennel, K., J. Wilkin, J. Levin, J. Moisan, J. O'Reilly, and D. Haidvogel, 2006: Nitrogen cycling in the Middle Atlantic Bight: Results from a three-dimensional model and implications for the North Atlantic nitrogen budget, ''Global Biogeochem. Cycles'', '''20''', GB3007, doi:10.1029/2005GB002456. ([http://marine.rutgers.edu/po/Papers/Fennel_etal_gbc.pdf PDF])  


Freeman, N. G., A. M. Hale, and M. B. Danard, 1972: A modified sigma equations' approach to the numerical modeling of great lake hydrodynamics, ''J. Geophys. Res.'', '''77''', 1050-1060.
<span id="FreemanNG_1972a"></span>Freeman, N. G., A. M. Hale, and M. B. Danard, 1972: A modified sigma equations' approach to the numerical modeling of great lake hydrodynamics, ''J. Geophys. Res.'', '''77''', 1050-1060.


=='''G'''==
=='''G'''==


Galperin, B., L. H. Kantha, S. Hassid, and A. Rosati, 1988: A quasi-equilibrium turbulent energy model for geophysical flows, ''J. Atmos. Sci.'', '''45''', 55-62.
<span id="GalperinB_1988a"></span>Galperin, B., L. H. Kantha, S. Hassid, and A. Rosati, 1988: A quasi-equilibrium turbulent energy model for geophysical flows, ''J. Atmos. Sci.'', '''45''', 55-62.


=='''H'''==
=='''H'''==


Haidvogel, D. B. and A. Beckmann, 1999: ''Numerical Ocean Circulation Modeling''. Series on Environmental Science and Management, Vol. '''2''', Imperial College Press, 319 pp.
<span id="HaidvogelDB_1999a"></span>Haidvogel, D. B. and A. Beckmann, 1999: ''Numerical Ocean Circulation Modeling''. Series on Environmental Science and Management, Vol. '''2''', Imperial College Press, 319 pp.


<span id="Haidvogel_2000a"></span>Haidvogel, D. B., H. G. Arango, K. Hedstrom, A. Beckmann, P. Malanotte-Rizzoli, and A. F. Shchepetkin, 2000: Model evaluation experiments in the North Atlantic Basin: Simulations in nonlinear terrain-following coordinates, ''Dyn. Atmos. Oceans'', '''32''', 239-281. ([http://marine.rutgers.edu/po/Papers/damee_roms1.pdf PDF])
<span id="HaidvogelDB_2000a"></span>Haidvogel, D. B., H. G. Arango, K. Hedstrom, A. Beckmann, P. Malanotte-Rizzoli, and A. F. Shchepetkin, 2000: Model evaluation experiments in the North Atlantic Basin: Simulations in nonlinear terrain-following coordinates, ''Dyn. Atmos. Oceans'', '''32''', 239-281. ([http://marine.rutgers.edu/po/Papers/damee_roms1.pdf PDF])


Hakkinen, S. and G. L. Mellor, 1992: Modeling the seasonal variability of a coupled arctic ice-ocean system, ''J. Geophys. Res.'', '''97''', 20285-20304.
<span id="HakkinenS_1992a"></span>Hakkinen, S. and G. L. Mellor, 1992: Modeling the seasonal variability of a coupled arctic ice-ocean system, ''J. Geophys. Res.'', '''97''', 20285-20304.


Hibler, III, W. D., 1979: A dynamic thermodynamic sea ice model, ''J. Phys. Oceanogr.'', '''9''', 815-846.
<span id="HiblerWD_1979a"></span>Hibler, III, W. D., 1979: A dynamic thermodynamic sea ice model, ''J. Phys. Oceanogr.'', '''9''', 815-846.


Hunke, E. C., 2001: Viscous-plastic sea ice dynamics with the EVP model: linearization issues, ''J. Comp. Phys.'', '''170''', 18-38.
<span id="HunkeEC_2001a"></span>Hunke, E. C., 2001: Viscous-plastic sea ice dynamics with the EVP model: linearization issues, ''J. Comp. Phys.'', '''170''', 18-38.


Hunke, E. C. and J. K. Dukowicz, 1997: An elastic-viscous-plastic model for sea ice dynamics, ''J. Phys. Oceanogr.'', '''27''', 1849-1868.
<span id="HunkeEC_1997a"></span>Hunke, E. C. and J. K. Dukowicz, 1997: An elastic-viscous-plastic model for sea ice dynamics, ''J. Phys. Oceanogr.'', '''27''', 1849-1868.


=='''I'''==
=='''I'''==
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=='''K'''==
=='''K'''==


Kantha, L.H., C.A. Clayson, 1994: Nermerical Models of Oceans and Oceanic Processes. In: ''International Geophysics Series'', Vol. '''66'''. Academic Press, San Diego. 940 pp.
<span id="KanthaLH_1994a"></span>Kantha, L.H., C.A. Clayson, 1994: Nermerical Models of Oceans and Oceanic Processes. In: ''International Geophysics Series'', Vol. '''66'''. Academic Press, San Diego. 940 pp.


Kosters, F., 2004: Denmark Strait overflow: Comparing model results and hydraulic transport estimates, ''J. Geophys. Res.'', '''109''', C10011, doi:10.1029/2004JC002297. ([http://marine.rutgers.edu/po/Papers/Kosters_2004_jgr.pdf PDF])
<span id="KostersF_2004a"></span>Kosters, F., 2004: Denmark Strait overflow: Comparing model results and hydraulic transport estimates, ''J. Geophys. Res.'', '''109''', C10011, doi:10.1029/2004JC002297. ([http://marine.rutgers.edu/po/Papers/Kosters_2004_jgr.pdf PDF])


=='''L'''==
=='''L'''==


Large, W. G., J. C. McWilliams, and S. C. Doney, 1994: Oceanic vertical mixing: a review and a model with a nonlocal boundary layer parameterization, ''Rev. Geophys.'', '''32''', 363-403.
<span id="LargeWG_1994a"></span>Large, W. G., J. C. McWilliams, and S. C. Doney, 1994: Oceanic vertical mixing: a review and a model with a nonlocal boundary layer parameterization, ''Rev. Geophys.'', '''32''', 363-403.


=='''M'''==
=='''M'''==


MacCready, P. and W. R. Geyer, 2001: Estuarine salt flux through an isohaline surface, ''J. Geophys. Res.'', '''106''' (C6), 11629-11637. ([http://marine.rutgers.edu/po/Papers/2001JC900006.pdf PDF])
<span id="MacCreadyP_2001a"></span>MacCready, P. and W. R. Geyer, 2001: Estuarine salt flux through an isohaline surface, ''J. Geophys. Res.'', '''106''' (C6), 11629-11637. ([http://marine.rutgers.edu/po/Papers/2001JC900006.pdf PDF])


Malanotte-Rizzoli, P., K. Hedstrom, H.G. Arango, and D.B. Haidvogel, 2000: Water mass pathways between the subtropical and tropical ocean in a climatological simulation of the North Atlantic ocean circulation,  ''Dyn. Atmos. Oceans'', '''32''', 331-371. ([http://marine.rutgers.edu/po/Papers/damee_roms2.pdf PDF])
<span id="MalanotteRP_2000a"></span>Malanotte-Rizzoli, P., K. Hedstrom, H.G. Arango, and D.B. Haidvogel, 2000: Water mass pathways between the subtropical and tropical ocean in a climatological simulation of the North Atlantic ocean circulation,  ''Dyn. Atmos. Oceans'', '''32''', 331-371. ([http://marine.rutgers.edu/po/Papers/damee_roms2.pdf PDF])


Marchesiello, P., J. C. McWilliams, A. F. Shchepetkin, 2001: Open boundary conditions for long-term integration of regional ocean models, ''Ocean Modelling'', '''3''', 1-20. ([http://marine.rutgers.edu/po/Papers/obc_oc.pdf PDF])  
<span id="MarchesielloP_2001a"></span>Marchesiello, P., J. C. McWilliams, A. F. Shchepetkin, 2001: Open boundary conditions for long-term integration of regional ocean models, ''Ocean Modelling'', '''3''', 1-20. ([http://marine.rutgers.edu/po/Papers/obc_oc.pdf PDF])  


Marchesiello, P., J. C. McWilliams, and A. Shchepetkin, 2003: Equilibrium structure and dynamics of the California Current System, ''J. Phys. Oceanogr.'', '''33''', 753-783. ([http://marine.rutgers.edu/po/Papers/CCS_jpo03.pdf PDF])
<span id="MarchesielloP_2003a"></span>Marchesiello, P., J. C. McWilliams, and A. Shchepetkin, 2003: Equilibrium structure and dynamics of the California Current System, ''J. Phys. Oceanogr.'', '''33''', 753-783. ([http://marine.rutgers.edu/po/Papers/CCS_jpo03.pdf PDF])


Mellor, G. L. and T. Yamada, 1982: Developement of a turbulence closure model for geophysical fluid problems, ''Rev. Geophys. Space Phys.'', '''20''', 851-875.
<span id="MellorGL_1982a"></span>Mellor, G. L. and T. Yamada, 1982: Developement of a turbulence closure model for geophysical fluid problems, ''Rev. Geophys. Space Phys.'', '''20''', 851-875.


Mellor, G. L. and L. Kantha, 1989: An ice-ocean coupled model, ''J. Geophys. Res.'', '''94''', 10,937-10,954.
<span id="MellorGL_1989a"></span>Mellor, G. L. and L. Kantha, 1989: An ice-ocean coupled model, ''J. Geophys. Res.'', '''94''', 10,937-10,954.


Moore, A. M., H. G. Arango, A. J. Miller, B. D. Cornuelle, E. Di Lorenzo and D. J. Neilson, 2004: A Comprehensive Ocean Prediction and Analysis System Based on the Tangent Linear and Adjoint Components of a Regional Ocean Model, ''Ocean Modelling'', '''7''', 227-258. ([http://marine.rutgers.edu/po/Papers/Moore_2004_om.pdf PDF])
<span id="MooreAM_2004a"></span>Moore, A. M., H. G. Arango, A. J. Miller, B. D. Cornuelle, E. Di Lorenzo and D. J. Neilson, 2004: A Comprehensive Ocean Prediction and Analysis System Based on the Tangent Linear and Adjoint Components of a Regional Ocean Model, ''Ocean Modelling'', '''7''', 227-258. ([http://marine.rutgers.edu/po/Papers/Moore_2004_om.pdf PDF])


=='''N'''==
=='''N'''==
Line 101: Line 101:
=='''P'''==
=='''P'''==


Peliz, A., J. Dubert, D. B. Haidvogel, 2003: Subinertial Response of a Density-Driven Eastern Boundary Poleward Current to Wind Forcing, ''J. Phys. Oceanogr.'', '''33''', 1633-1650. ([http://marine.rutgers.edu/po/Papers/Peliz_jpo03.pdf PDF])
<span id="PelizA_2003a"></span>Peliz, A., J. Dubert, D. B. Haidvogel, 2003: Subinertial Response of a Density-Driven Eastern Boundary Poleward Current to Wind Forcing, ''J. Phys. Oceanogr.'', '''33''', 1633-1650. ([http://marine.rutgers.edu/po/Papers/Peliz_jpo03.pdf PDF])


Peliz, A., J. Dubert, D. B. Haidvogel, and B. Le Cann, 2003: Generation and unstable evolution of a density-driven Eastern Poleward Current: The Iberian Poleward Current, ''J. Geophys. Res.'', '''108''' (C8), 3268, doi:10.1029/2002JC001443. ([http://marine.rutgers.edu/po/Papers/Peliz_jpo03.pdf PDF])
<span id="PelizA_2003b"></span>Peliz, A., J. Dubert, D. B. Haidvogel, and B. Le Cann, 2003: Generation and unstable evolution of a density-driven Eastern Poleward Current: The Iberian Poleward Current, ''J. Geophys. Res.'', '''108''' (C8), 3268, doi:10.1029/2002JC001443. ([http://marine.rutgers.edu/po/Papers/Peliz_jpo03.pdf PDF])


Penven, P., C. Roy, A. Colin de Verdiere and J. Largier, 2000: Simulation of a coastal jet retention process using a barotropic model, ''Oceanology Acta'', ''23''(5), 615-634. ([http://marine.rutgers.edu/po/Papers/oceano_act_2000_23_5.pdf PDF])
<span id="PenvenP_2000a"></span>Penven, P., C. Roy, A. Colin de Verdiere and J. Largier, 2000: Simulation of a coastal jet retention process using a barotropic model, ''Oceanology Acta'', ''23''(5), 615-634. ([http://marine.rutgers.edu/po/Papers/oceano_act_2000_23_5.pdf PDF])


Penven, P., C. Roy, J.R.E. Lutjeharms, A. Colin de Verdiere, A. Johnson, F. Shillington, P. Freon and G. Brundrit, 2001:  A regional hydrodynamic model of the Southern Benguela, ''S. Afr. J. Sci. Res. Letters'', '''97''', 1-4. ([http://marine.rutgers.edu/po/Papers/s_afr_j_sci_2001_97_11-12.pdf PDF])
<span id="PenvenP_2001a"></span>Penven, P., C. Roy, J.R.E. Lutjeharms, A. Colin de Verdiere, A. Johnson, F. Shillington, P. Freon and G. Brundrit, 2001:  A regional hydrodynamic model of the Southern Benguela, ''S. Afr. J. Sci. Res. Letters'', '''97''', 1-4. ([http://marine.rutgers.edu/po/Papers/s_afr_j_sci_2001_97_11-12.pdf PDF])


Penven, P., J. R. E. Lutjeharms, P. Marchesiello, C. Roy and S. J. Weeks, 2001: Generation of cyclonic eddies by the Agulhas Current in the lee of the Agulhas Bank, ''Geophys. Res. Letters'', '''27''', 1055-1058. ([http://marine.rutgers.edu/po/Papers/grl_2001_28_6.pdf PDF])
<span id="PenvenP_2001b"></span>Penven, P., J. R. E. Lutjeharms, P. Marchesiello, C. Roy and S. J. Weeks, 2001: Generation of cyclonic eddies by the Agulhas Current in the lee of the Agulhas Bank, ''Geophys. Res. Letters'', '''27''', 1055-1058. ([http://marine.rutgers.edu/po/Papers/grl_2001_28_6.pdf PDF])


Phillips, N. A., 1957: A coordinate system having some special advantages for numerical forecasting, ''J. Meteorology'', '''14''', 184-185.
<span id="PhillipsNA_1957a"></span>Phillips, N. A., 1957: A coordinate system having some special advantages for numerical forecasting, ''J. Meteorology'', '''14''', 184-185.


=='''Q'''==
=='''Q'''==
Line 117: Line 117:
=='''R'''==
=='''R'''==


Robertson, R., 2006: Modeling internal tides over Fieberling Guyot: resolution, parameterization, performance, ''Ocean Dynamics'', doi:10.1007/s10236-006-0062-5. ([http://marine.rutgers.edu/po/Papers/Robertson_OceanDynamics-06.pdf PDF])
<span id="RobertsonR_2006a"></span>Robertson, R., 2006: Modeling internal tides over Fieberling Guyot: resolution, parameterization, performance, ''Ocean Dynamics'', doi:10.1007/s10236-006-0062-5. ([http://marine.rutgers.edu/po/Papers/Robertson_OceanDynamics-06.pdf PDF])


=='''S'''==
=='''S'''==


Semtner, Jr., A. J., 1976: A model for the thermodynamic growth of sea ice in numerical investigations of climate, ''J. Phys. Oceanogr.'', '''6''', 379-389.
<span id="SemtnerAJ_1976a"></span>Semtner, Jr., A. J., 1976: A model for the thermodynamic growth of sea ice in numerical investigations of climate, ''J. Phys. Oceanogr.'', '''6''', 379-389.


Shchepetkin, A. F., and J. C. McWilliams, 1998: Quasi-monotone advection schemes based on explicit locally adaptive dissipation, ''Monthly Weather Rev.'', '''126''', 1541-1580. ([http://marine.rutgers.edu/po/Papers/shch_mcw_1999.pdf PDF])
<span id="ShchepetkinAF_1998a"></span>Shchepetkin, A. F., and J. C. McWilliams, 1998: Quasi-monotone advection schemes based on explicit locally adaptive dissipation, ''Monthly Weather Rev.'', '''126''', 1541-1580. ([http://marine.rutgers.edu/po/Papers/shch_mcw_1999.pdf PDF])


Shchepetkin, A. F., and J. C. McWilliams, 2003: A method for computing horizontal pressure-gradient force in an oceanic model with a nonaligned vertical coordinate, ''J. Geophys. Res.'', '''108''' (C3), 3090, doi:10.1029/2001JC001047. ([http://marine.rutgers.edu/po/Papers/2001JC001047.pdf PDF])
<span id="ShchepetkinAF_2003a"></span>Shchepetkin, A. F., and J. C. McWilliams, 2003: A method for computing horizontal pressure-gradient force in an oceanic model with a nonaligned vertical coordinate, ''J. Geophys. Res.'', '''108''' (C3), 3090, doi:10.1029/2001JC001047. ([http://marine.rutgers.edu/po/Papers/2001JC001047.pdf PDF])


Shchepetkin, A. F., and J. C. McWilliams, 2005: The Regional Ocean Modeling System: A split-explicit, free-surface, topography following coordinates ocean model, ''Ocean Modelling'', '''9''', 347-404. ([http://marine.rutgers.edu/po/Papers/Shchepetkin_om05.pdf PDF])
<span id="ShchepetkinAF_2005a"></span>Shchepetkin, A. F., and J. C. McWilliams, 2005: The Regional Ocean Modeling System: A split-explicit, free-surface, topography following coordinates ocean model, ''Ocean Modelling'', '''9''', 347-404. ([http://marine.rutgers.edu/po/Papers/Shchepetkin_om05.pdf PDF])


She, J. and J. M. Klinck, 2000: Flow near submarine canyons driven by constant winds, ''J. Geophys. Res.'', '''105'''(C12), 28671-28694. ([http://marine.rutgers.edu/po/Papers/2000JC900126.pdf PDF])
<span id="SheJ_2000a"></span>She, J. and J. M. Klinck, 2000: Flow near submarine canyons driven by constant winds, ''J. Geophys. Res.'', '''105'''(C12), 28671-28694. ([http://marine.rutgers.edu/po/Papers/2000JC900126.pdf PDF])


Smith, W.O., Jr., M.S. Dinniman, J.M. Klinck and E.E. Hofmann, 2003: Biogeochemical Climatologies of the Ross Sea, Antarctica: Seasonal Patterns of Nutrients and Biomass, ''Deep-Sea Res., Part II'', '''50''', 3083-3101. ([http://marine.rutgers.edu/po/Papers/DSRII1414.pdf PDF])
<span id="SmithWO_2003a"></span>Smith, W.O., Jr., M.S. Dinniman, J.M. Klinck and E.E. Hofmann, 2003: Biogeochemical Climatologies of the Ross Sea, Antarctica: Seasonal Patterns of Nutrients and Biomass, ''Deep-Sea Res., Part II'', '''50''', 3083-3101. ([http://marine.rutgers.edu/po/Papers/DSRII1414.pdf PDF])


Song, Y. and D. B. Haidvogel, 1994: A semi-implicit ocean circulation model using a generalized topography-following coordinate system, ''J. Comp. Phys.'', '''115''' (1), 228-244. ([http://marine.rutgers.edu/po/Papers/scrum.pdf PDF])
<span id="SongY_1994a"></span>Song, Y. and D. B. Haidvogel, 1994: A semi-implicit ocean circulation model using a generalized topography-following coordinate system, ''J. Comp. Phys.'', '''115''' (1), 228-244. ([http://marine.rutgers.edu/po/Papers/scrum.pdf PDF])


Styles, R. and S. M. Glenn, 2000: Modeling stratified wave and current bottom boundary layers in the continental shelf, ''J. Geophys. Res.'', '''105''', 24119-24139. ([http://marine.rutgers.edu/po/Papers/styles00.pdf PDF])
<span id="StylesR_2000a"></span>Styles, R. and S. M. Glenn, 2000: Modeling stratified wave and current bottom boundary layers in the continental shelf, ''J. Geophys. Res.'', '''105''', 24119-24139. ([http://marine.rutgers.edu/po/Papers/styles00.pdf PDF])


=='''T'''==
=='''T'''==
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=='''U'''==


Umlauf, L., H. Burchard, 2003: A generic length-scale equation for geophysical turbulence models, ''J. Marine Res.'', '''61''', 235-265.
<span id="UmlaufL_2003a"></span>Umlauf, L., H. Burchard, 2003: A generic length-scale equation for geophysical turbulence models, ''J. Marine Res.'', '''61''', 235-265.


=='''V'''==
=='''V'''==
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<span id="Warner_2005a"></span>Warner, J. C., C. R. Sherwood, H. G. Arango, and R. P. Signell, 2005a: Performance of four Turbulence Closure Methods Implemented using a Generic Length Scale Method, ''Ocean Modelling'', '''8''', 81-113. ([http://marine.rutgers.edu/po/Papers/Warner_2004_om.pdf PDF])
<span id="WarnerJC_2005a"></span>Warner, J. C., C. R. Sherwood, H. G. Arango, and R. P. Signell, 2005a: Performance of four Turbulence Closure Methods Implemented using a Generic Length Scale Method, ''Ocean Modelling'', '''8''', 81-113. ([http://marine.rutgers.edu/po/Papers/Warner_2004_om.pdf PDF])


<span id="Warner_2005b"></span>Warner, J. C., W. R. Geyer, and J. A. Lerczak, 2005b: Numerical modeling of an estuary: A comprehensive skill assessment, ''J. Geophys. Res.'', '''110''', C05001, doi:10.1029/2004JC002691. ([http://marine.rutgers.edu/po/Papers/Warner_2005_jgr.pdf PDF])
<span id="WarnerJC_2005b"></span>Warner, J. C., W. R. Geyer, and J. A. Lerczak, 2005b: Numerical modeling of an estuary: A comprehensive skill assessment, ''J. Geophys. Res.'', '''110''', C05001, doi:10.1029/2004JC002691. ([http://marine.rutgers.edu/po/Papers/Warner_2005_jgr.pdf PDF])


<span id="Wilkin_2005a"></span>Wilkin, J. L., H. G. Arango, D. B. Haidvogel, C. S. Lichtenwalner, S. M. Durski, and K. S. Hedstrom, 2005: A regional Ocean Modeling System for the Long-term Ecosystem Observatory, ''J. Geophys. Res.'', '''110''', C06S91, doi:10.1029/2003JC002218. ([http://marine.rutgers.edu/po/Papers/Wilkin_2005_jgr.pdf PDF])
<span id="WilkinJL_2005a"></span>Wilkin, J. L., H. G. Arango, D. B. Haidvogel, C. S. Lichtenwalner, S. M. Durski, and K. S. Hedstrom, 2005: A regional Ocean Modeling System for the Long-term Ecosystem Observatory, ''J. Geophys. Res.'', '''110''', C06S91, doi:10.1029/2003JC002218. ([http://marine.rutgers.edu/po/Papers/Wilkin_2005_jgr.pdf PDF])


<span id="Winsor_2004a"></span>Winsor, P. and D. C. Chapman, 2004: Pathways of Pacific water across the Chukchi Sea: A numerical model study, ''J. Geophys. Res.'', '''109''', C03002, doi: 10.1029/2003JC001962. ([http://marine.rutgers.edu/po/Papers/winsor2004_jgr.pdf PDF])
<span id="WinsorP_2004a"></span>Winsor, P. and D. C. Chapman, 2004: Pathways of Pacific water across the Chukchi Sea: A numerical model study, ''J. Geophys. Res.'', '''109''', C03002, doi: 10.1029/2003JC001962. ([http://marine.rutgers.edu/po/Papers/winsor2004_jgr.pdf PDF])


=='''X'''==
=='''X'''==

Revision as of 00:38, 14 November 2006

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V

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X

Y

Z