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Corrected several bugs to allow running 4DVAR over multiple outer loops and preconditioning. Also correcte couple of typos in the c-preprocessing directives.

Many thanks to Andy Moore for his help in tracking this bugs.

Changed the default color of the background and foreground objects to white and black, respectively, in plotting programs cnt and sec. The NCAR's plotting library has as default a black background and white foreground.

Many thanks to Wang Dakui for ​reporting this problem.

Added several Matlab scripts:

• caldate: Converts Julian day number to calendar date structure.
• eos: ROMS equation of state for seawater.
• gcircle: Great circle distance between two (lon,lat) points.
• geodesic_dist: Geodesic distance between two (lon,lat) points.
• gregorian: Converts Julian day number to Gregorian calendar date.
• greg2str: Converts Gregorian date array to string.
• hms2h: Converts hours, minutes, and seconds to decimal hours.
• julian: Converts Gregorian calendar date to Julian day numbers.
• rfactor: Computes bathymetry stiffness ratio, r-factor.
• smooth_bath: Smooths bathymetry as function of the r-factor.
• shapiro1: 1D Shapiro filter.
• shapiro2: 2D Shapiro filter.
• s2hms: Converts decimal seconds to integer hour, minute, seconds.