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Ticket Owner Reporter Resolution Summary
#221 arango arango Fixed NEMURO bug in large phytoplankton primary productivity
Description

There is a bug in NEMURO formulation of the gross primary productivity for large phytoplankton: diatom Si:N uptake ratio. The new formulation is consistent with Yamanaka et al., J. Oceanography, 2004.

The computation of GppPL at line 411 of nemuro.h is changed from

             cff6=fac1*Bio(i,k,iSiOH)/(KSiL(ng)+Bio(i,k,iSiOH))

to

             cff6=Bio(i,k,iSiOH)/(KSiL(ng)+Bio(i,k,iSiOH))

that is, the temperature dependency term cff1 is removed.

Many thanks to Jerome Fiechter for reporting this bug.

#222 arango arango Done _FillValue for Land Masked in Output NetCDF
Description

Updated NetCDF IO routines to use the _FillValue attribute when land/sea masking is activated. At output, the land points are overwriten with the fill value spval which is defined in mod_scalar.F. Currently, spval=1.0E+35. The IO input routines are also cleverly modified to replace such masked values with zero. For more information about this request check the following forum message.

#223 arango arango Fixed Problem with masked grid arrays in output NetCDF files
Description

I forgot to add the logic that avoids replacing grid arrays with the _FillValue strategy introduced in src:ticket:222. The tindex argument is used to avoid overwriting such variables in masked areas.

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