IMPORTANT: Updated several routines for nesting

[arango]

This update includes changes to few routines associated with nesting. The changes are primarily due to land/sea masking (MASKING and WET_DRY). Many thanks to John Warner for the corrections.

• Updated nesting.F, main3d.F, u2dbc_im.F, and v3dbc_im.F. Also, updated the TLM, RPM, and ADM versions.

• Corrected adjoint bugs in ad_u2dbc_im.F in implementing the western edge Shchepetkin boundary condition formulation.

• Updated the documentation and reporting of 4D-Var input parameters in s4dvar.in and read_asspar.F, respectively, for the background quality control of input observations (BGQC). The threshold values P_bgqc and S_bgqc are the squared number of standard deviations used in the quality control for rejecting observations. The information was incomplete, missing the fact that the user needs to enter a squared number value. Many thanks to Andy Moore for bringing this to my attention.