Generating initial file
Generating initial file
Hey there, I am trying to generate initial file for ROMS using data in HYCOM, yet some error comes out.
[snd2@d2-ocean roms_clm]$ matlab -nodisplay -nosplash -nodesktop -r "runsnd2/COAWST/Tools/mfiles/roms_clm/roms_master_climatology_coawst_mw.m');
< M A T L A B (R) >
Copyright 1984-2016 The MathWorks, Inc.
R2016a (9.0.0.341360) 64-bit (glnxa64)
February 11, 2016
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
modelgrid =
/home/snd2/COAWST/task/ROMS_WW3_cs/ROMS/grid13_gebco_smooth4.nc
getting roms grid, hycom grid, and overlapping indices
Undefined function or variable 'get_ijrg'.
Error in roms_master_climatology_coawst_mw (line 57)
[gn, clm]=get_ijrg(url, modelgrid, theta_s, theta_b, Tcline, N, Vtransfo
Vstretching);
Error in run (line 96)
evalin('caller', [script ';']);
>> exit
[snd2@d2-ocean roms_clm]$ matlab -nodisplay -nosplash -nodesktop -r "runsnd2/COAWST/Tools/mfiles/roms_clm/roms_master_climatology_coawst_mw.m');
< M A T L A B (R) >
Copyright 1984-2016 The MathWorks, Inc.
R2016a (9.0.0.341360) 64-bit (glnxa64)
February 11, 2016
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
modelgrid =
/home/snd2/COAWST/task/ROMS_WW3_cs/ROMS/grid13_gebco_smooth4.nc
getting roms grid, hycom grid, and overlapping indices
Undefined function or variable 'get_ijrg'.
Error in roms_master_climatology_coawst_mw (line 57)
[gn, clm]=get_ijrg(url, modelgrid, theta_s, theta_b, Tcline, N, Vtransfo
Vstretching);
Error in run (line 96)
evalin('caller', [script ';']);
>> exit
- Attachments
-
roms_master_climatology_coawst_mw.m
- (6.68 KiB) Downloaded 258 times
Re: Generating initial file
and I have checked get_ijrg.m did exist in the working directory
Re: Generating initial file
Here's the update version of the matlab file
- Attachments
-
roms_master_climatology_coawst_mw.m
- (6.6 KiB) Downloaded 302 times
Re: Generating initial file
well, if the get_ijrg m file exists, and your matlab can not find it,
then maybe it has to deal with the paths for matlab. maybe you need to set all the Tools/ folder to be in your matlab path??
-j
then maybe it has to deal with the paths for matlab. maybe you need to set all the Tools/ folder to be in your matlab path??
-j
Re: Generating initial file
thank you. I have solved the problem but another problem occurs.
the following error was generated when I tried to create initial file by a restart file
grid_file =
/home/snd2/COAWST/task/ROMS_WW3_cs/ROMS/input/grid13_gebco_smooth4.nc
Initializing zeta
Initializing u, v, ubar, and vbar
Initializing temp and salt
Initializing suspended sediments.
Error using internal.matlab.imagesci.nc/getGroupAndVarid (line 2083)
Could not find variable or group 'sand_01' in file.
Error in internal.matlab.imagesci.nc/read (line 593)
[gid, varid] = getGroupAndVarid(this, location);
Error in ncread (line 58)
vardata = ncObj.read(varName, varargin{:});
Error in create_roms_init (line 234)
zz=ncread(data_file,['sand_',count],[1 1 1 tidx],[Inf Inf Inf 1]);
Error in run (line 96)
evalin('caller', [script ';']);
May I ask where should I change in the matlab script
the following error was generated when I tried to create initial file by a restart file
grid_file =
/home/snd2/COAWST/task/ROMS_WW3_cs/ROMS/input/grid13_gebco_smooth4.nc
Initializing zeta
Initializing u, v, ubar, and vbar
Initializing temp and salt
Initializing suspended sediments.
Error using internal.matlab.imagesci.nc/getGroupAndVarid (line 2083)
Could not find variable or group 'sand_01' in file.
Error in internal.matlab.imagesci.nc/read (line 593)
[gid, varid] = getGroupAndVarid(this, location);
Error in ncread (line 58)
vardata = ncObj.read(varName, varargin{:});
Error in create_roms_init (line 234)
zz=ncread(data_file,['sand_',count],[1 1 1 tidx],[Inf Inf Inf 1]);
Error in run (line 96)
evalin('caller', [script ';']);
May I ask where should I change in the matlab script
- Attachments
-
create_roms_init_qck.m
- (17.04 KiB) Downloaded 270 times
-
- Posts: 5
- Joined: Sat Jul 14, 2012 2:04 am
- Location: University of California at Santa Cruz
Re: Generating initial file
Hi,
This is because you have defined NNS = 1 in creat_roms_init_qck.m on line 179, but there isn't sediment variable information in the data_file '/home/snd2/cs/cs_trial_restart/ocean_rst.nc'.
If you don't need to initialize sediment variables, set NNS = 0.
Christie
This is because you have defined NNS = 1 in creat_roms_init_qck.m on line 179, but there isn't sediment variable information in the data_file '/home/snd2/cs/cs_trial_restart/ocean_rst.nc'.
If you don't need to initialize sediment variables, set NNS = 0.
Christie
Re: Generating initial file
How about if bed thickness? Where can I close this option?
Re: Generating initial file
hello, have you generated initial file for ROMS using data in HYCOM successfully? while can I download *.m files you mentioned ? eg. roms_master_climatology_coawst_mw.m ,get_ijrg.m and so on