Regarding creation of ROMS FILES before compilation in ROMS PISCES model

[SSRIVASTAVA]

While I am running make_biol with PISCES BIOGEOCHEMICAL package, the following error is coming:


Make a few plots...
========================
Climatology for PISCES variables
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_biol.m' could
not be cleared because it contains MATLAB code that is currently executing.
> In make_clim_pisces (line 1)
In make_biol (line 64)
Warning: Closing open netCDF file handles.
> In make_clim_pisces (line 1)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_clim_pisces.m'
could not be cleared because it contains MATLAB code that is currently
executing.
> In make_clim_pisces (line 1)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_biol.m' could
not be cleared because it contains MATLAB code that is currently executing.
> In make_clim_pisces (line 1)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_clim_pisces.m'
could not be cleared because it contains MATLAB code that is currently
executing.
> In make_clim_pisces (line 1)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_biol.m' could
not be cleared because it contains MATLAB code that is currently executing.
> In make_clim_pisces (line 1)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_clim_pisces.m'
could not be cleared because it contains MATLAB code that is currently
executing.
> In make_clim_pisces (line 1)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_biol.m' could
not be cleared because it contains MATLAB code that is currently executing.
> In make_clim_pisces (line 17)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_clim_pisces.m'
could not be cleared because it contains MATLAB code that is currently
executing.
> In make_clim_pisces (line 17)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_biol.m' could
not be cleared because it contains MATLAB code that is currently executing.
> In make_clim_pisces (line 17)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_clim_pisces.m'
could not be cleared because it contains MATLAB code that is currently
executing.
> In make_clim_pisces (line 17)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_biol.m' could
not be cleared because it contains MATLAB code that is currently executing.
> In make_clim_pisces (line 17)
In make_biol (line 64)
Warning: The file
'/export/home/shuchita/ROMS_working/Run3/Preprocessing_tools/make_clim_pisces.m'
could not be cleared because it contains MATLAB code that is currently
executing.
> In make_clim_pisces (line 17)
In make_biol (line 64)

obc =

1 1 1 1

======================================================
=> You need the roms_oa.nc file created by make_clim.m
=> with makeoa=1 from romstools_param.m
======================================================
Add_no3: creating variables and attributes for the OA file
In an assignment A(:) = B, the number of elements in A and B must be the same.

Error in ncvar/subsasgn (line 295)
temp(:) = other;

Error in netcdf/subsasgn (line 83)
result = subsasgn(v, s, other);

Error in add_no3 (line 126)
nc{'no3_time'}(:)=t*30; % if time in month in the dataset !!!

Error in make_clim_pisces (line 65)
add_no3(oaname,clmname,ininame,grdname,no3_seas_data,...

Error in make_biol (line 64)
make_clim_pisces

>>

[MIDHILAVARNAV]

You would have to set the switch for intermediate file (OA ) ON (ie to 1) in the parameter file(romstools_param.m). And try re-running the script again.