ROMS compilation

Discussion on computers, ROMS installation and compiling

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al-sariri
Posts: 6
Joined: Thu Aug 27, 2015 8:45 pm
Location: qatar meteorolgy department

ROMS compilation

#1 Unread post by al-sariri »

Dear all
I am new one with ROMS model, I am trying to compile ROMS , but I have gotten a problem
that is
mod_netcdf.f90:19.10:

USE netcdf
1
Fatal Error: Wrong module version '10' (expected '9') for file 'netcdf.mod' opened at (1)
make: *** [/home/nwp/Projects/upwelling/Build/mod_netcdf.o] Error 1

for more imformation
I compiled netcdf (netcdf-4.3.3.1) C release
whith gcc(gcc (GCC) 4.7.2 20121015 (Red Hat 4.7.2-5))
also, netcdf(netcdf-fortran-4.4.2) fortran release
whith gfortran (GNU Fortran (GCC) 4.7.2 20121015 (Red Hat 4.7.2-5))
and all of them were built succesfully.
so, any one can help me,Please??
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User avatar
kate
Posts: 4091
Joined: Wed Jul 02, 2003 5:29 pm
Location: CFOS/UAF, USA

Re: ROMS compilation

#2 Unread post by kate »

It says netcdf-fortran was compiled with a newer version of gfortran than you are currently using. Do you know how that can be? You claim to have compiled it yourself?
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al-sariri
Posts: 6
Joined: Thu Aug 27, 2015 8:45 pm
Location: qatar meteorolgy department

Re: ROMS compilation

#3 Unread post by al-sariri »

thank you, I have gone over what I did.
So,the problem with compiler version,unfortunately, I have gotten another problem recently.





/home/nwp/Projects/upwelling/Build/libUTIL.a(close_io.o): In function `close_out_':
/home/nwp/Projects/upwelling/Build/close_io.f90:195: undefined reference to `__netcdf_MOD_nf90_strerror'
/home/nwp/Projects/upwelling/Build/close_io.f90:197: undefined reference to `__netcdf_MOD_nf90_strerror'
/home/nwp/Projects/upwelling/Build/libUTIL.a(lbc.o): In function `lbc_getatt_':
/home/nwp/Projects/upwelling/Build/lbc.f90:84: undefined reference to `__netcdf_MOD_nf90_get_att_text'
/home/nwp/Projects/upwelling/Build/libUTIL.a(lbc.o): In function `lbc_putatt_':
/home/nwp/Projects/upwelling/Build/lbc.f90:452: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/libUTIL.a(nf_fwrite2d.o): In function `__nf_fwrite2d_mod_MOD_nf_fwrite2d':
/home/nwp/Projects/upwelling/Build/nf_fwrite2d.f90:143: undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libUTIL.a(nf_fwrite3d.o): In function `__nf_fwrite3d_mod_MOD_nf_fwrite3d':
/home/nwp/Projects/upwelling/Build/nf_fwrite3d.f90:155: undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libUTIL.a(def_dim.o): In function `def_dim_':
/home/nwp/Projects/upwelling/Build/def_dim.f90:56: undefined reference to `__netcdf_MOD_nf90_def_dim'
/home/nwp/Projects/upwelling/Build/libUTIL.a(def_info.o): In function `def_info_':
/home/nwp/Projects/upwelling/Build/def_info.f90:157: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_info.f90:169: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_info.f90:183: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_info.f90:232: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_info.f90:244: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/libUTIL.a(def_info.o):/home/nwp/Projects/upwelling/Build/def_info.f90:253: more undefined references to `__netcdf_MOD_nf90_put_att_text' follow
/home/nwp/Projects/upwelling/Build/libUTIL.a(def_var.o): In function `__def_var_mod_MOD_def_var':
/home/nwp/Projects/upwelling/Build/def_var.f90:113: undefined reference to `__netcdf_MOD_nf90_def_var_scalar'
/home/nwp/Projects/upwelling/Build/def_var.f90:116: undefined reference to `__netcdf_MOD_nf90_def_var_manydims'
/home/nwp/Projects/upwelling/Build/def_var.f90:133: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:150: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:168: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:186: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:204: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'
/home/nwp/Projects/upwelling/Build/def_var.f90:207: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:210: undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:230: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'
/home/nwp/Projects/upwelling/Build/def_var.f90:233: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:236: undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:258: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:263: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:289: undefined reference to `__netcdf_MOD_nf90_put_att_fourbyteint'
/home/nwp/Projects/upwelling/Build/def_var.f90:292: undefined reference to `__netcdf_MOD_nf90_put_att_fourbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:295: undefined reference to `__netcdf_MOD_nf90_put_att_eightbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:301: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:325: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:342: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:359: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:376: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/libUTIL.a(def_var.o):/home/nwp/Projects/upwelling/Build/def_var.f90:393: more undefined references to `__netcdf_MOD_nf90_put_att_text' follow
/home/nwp/Projects/upwelling/Build/libUTIL.a(def_var.o): In function `__def_var_mod_MOD_def_var':
/home/nwp/Projects/upwelling/Build/def_var.f90:428: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'
/home/nwp/Projects/upwelling/Build/def_var.f90:431: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:434: undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:454: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'
/home/nwp/Projects/upwelling/Build/def_var.f90:457: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:460: undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:480: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'
/home/nwp/Projects/upwelling/Build/def_var.f90:483: undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:486: undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'
/home/nwp/Projects/upwelling/Build/def_var.f90:505: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:522: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:597: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:615: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/def_var.f90:632: undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/nwp/Projects/upwelling/Build/libUTIL.a(nf_fread2d.o): In function `__nf_fread2d_mod_MOD_nf_fread2d':
/home/nwp/Projects/upwelling/Build/nf_fread2d.f90:213: undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libUTIL.a(nf_fread3d.o): In function `__nf_fread3d_mod_MOD_nf_fread3d':
/home/nwp/Projects/upwelling/Build/nf_fread3d.f90:200: undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libUTIL.a(nf_fread4d.o): In function `__nf_fread4d_mod_MOD_nf_fread4d':
/home/nwp/Projects/upwelling/Build/nf_fread4d.f90:203: undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_sync':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4502: undefined reference to `__netcdf_MOD_nf90_sync'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_redef':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4448: undefined reference to `__netcdf_MOD_nf90_redef'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_open':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4392: undefined reference to `__netcdf_MOD_nf90_open'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4394: undefined reference to `__netcdf_MOD_nf90_open'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4396: undefined reference to `__netcdf_MOD_nf90_open'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_enddef':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4335: undefined reference to `__netcdf_MOD_nf90_enddef'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_create':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4283: undefined reference to `__netcdf_MOD_nf90_create'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_close':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4217: undefined reference to `__netcdf_MOD_nf90_get_att_text'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4225: undefined reference to `__netcdf_MOD_nf90_close'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_svar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4126: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4144: undefined reference to `__netcdf_MOD_nf90_put_var_1d_text'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_svar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4019: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:4035: undefined reference to `__netcdf_MOD_nf90_put_var_text'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_lvar_2d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3901: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3928: undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_lvar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3782: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3807: undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_lvar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3660: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3684: undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3687: undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_ivar_2d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3551: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3565: undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_ivar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3447: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3461: undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_ivar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3338: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3353: undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3356: undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_fvar_4d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3233: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3247: undefined reference to `__netcdf_MOD_nf90_put_var_4d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_fvar_3d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3129: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3143: undefined reference to `__netcdf_MOD_nf90_put_var_3d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_fvar_2d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3025: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:3039: undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_fvar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2921: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2935: undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_put_fvar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2812: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2827: undefined reference to `__netcdf_MOD_nf90_put_var_eightbytereal'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2830: undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_svar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2710: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2713: undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2715: undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_svar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2608: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2611: undefined reference to `__netcdf_MOD_nf90_get_var_text'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2613: undefined reference to `__netcdf_MOD_nf90_get_var_text'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_ivar_2d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2507: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2510: undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2512: undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_ivar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2404: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2407: undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2409: undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_ivar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2301: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2304: undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2307: undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_lvar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2162: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2165: undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2169: undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2171: undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2184: undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2186: undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_lvar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2022: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2025: undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2029: undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2032: undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2043: undefined reference to `__netcdf_MOD_nf90_get_var_text'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:2045: undefined reference to `__netcdf_MOD_nf90_get_var_text'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_fvar_4d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1857: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1860: undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1862: undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_fvar_3d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1678: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1681: undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1683: undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_fvar_2d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1504: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1507: undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1509: undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_fvar_1d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1330: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1333: undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1335: undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_fvar_0d':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1197: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1200: undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1203: undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_fatt':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1067: undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1070: undefined reference to `__netcdf_MOD_nf90_inq_attname'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:1075: undefined reference to `__netcdf_MOD_nf90_get_att_one_eightbytereal'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_inq_varid':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:982: undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_inq_var':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:706: undefined reference to `__netcdf_MOD_nf90_inquire'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:718: undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:722: undefined reference to `__netcdf_MOD_nf90_inq_attname'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:810: undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:821: undefined reference to `__netcdf_MOD_nf90_inq_attname'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:826: undefined reference to `__netcdf_MOD_nf90_inquire_attribute'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:832: undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbyteint'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:848: undefined reference to `__netcdf_MOD_nf90_get_att_one_eightbytereal'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:862: undefined reference to `__netcdf_MOD_nf90_get_att_text'
/home/nwp/Projects/upwelling/Build/libMODS.a(mod_netcdf.o): In function `__mod_netcdf_MOD_netcdf_get_dim':
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:212: undefined reference to `__netcdf_MOD_nf90_inquire'
/home/nwp/Projects/upwelling/Build/mod_netcdf.f90:222: undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
collect2: error: ld returned 1 exit status
make: *** [/home/nwp/Projects/upwelling/oceanG] Error 1
Top
User avatar
kate
Posts: 4091
Joined: Wed Jul 02, 2003 5:29 pm
Location: CFOS/UAF, USA

Re: ROMS compilation

#4 Unread post by kate »

The line before the stuff you quoted is the interesting one and should look something like:

Code: Select all

/opt/cray/xt-asyncpe/5.29/bin/ftn  -O3  /center/w/kate/Build_Afish/esmf_roms.o /center/w/kate/Build_Afish/master.o /center/w/kate/Build_Afish/ocean_control.o /center/w/kate/Build_Afish/ocean_coupler.o /center/w/kate/Build_Afish/propagator.o /center/w/kate/Build_Afish/roms_export.o /center/w/kate/Build_Afish/roms_import.o -o oceanM /center/w/kate/Build_Afish/libMODS.a /center/w/kate/Build_Afish/libNLM.a /center/w/kate/Build_Afish/libNLM_bio.a /center/w/kate/Build_Afish/libNLM_sed.a /center/w/kate/Build_Afish/libANA.a /center/w/kate/Build_Afish/libICE.a /center/w/kate/Build_Afish/libUTIL.a /center/w/kate/Build_Afish/libMODS.a  -L/opt/cray/netcdf/4.3.2/PGI/141/lib -lnetcdff -L/opt/cray/hdf5/1.8.13/PGI/141/lib -lnetcdf
Here, the "-L/opt/cray/netcdf/4.3.2/PGI/141/lib" tells it where to look for netcdf libraries, "-L/opt/cray/hdf5/1.8.13/PGI/141/lib" tells it where to find the HDF5 library and "-lnetcdff -lnetcdf" is asking it to link to the Fortran and C netcdf libraries.

I was going to show you what this looks like on my Linux laptop, but the auto-updater was through and now I need to recompile netcdf:

Code: Select all

cd Build_up; /usr/bin/gfortran -c -frepack-arrays -g -fbounds-check mod_netcdf.f90
mod_netcdf.f90:19.10:

      USE netcdf
          1
Fatal Error: Cannot read module file 'netcdf.mod' opened at (1), because it was created by a different version of GNU Fortran
Top
al-sariri
Posts: 6
Joined: Thu Aug 27, 2015 8:45 pm
Location: qatar meteorolgy department

Re: ROMS compilation

#5 Unread post by al-sariri »

Dear kate
the problem is solved
drwxrwxr-x. 2 nwp nwp 24576 Sep 6 19:31 Build
-rwxrwxr-x. 1 nwp nwp 17447 Sep 6 19:30 build.bash
-rwxrwxr-x. 1 nwp nwp 17447 Sep 6 19:27 build.bash_1
-rwxrwxr-x. 1 nwp nwp 13136279 Sep 6 19:31 oceanG
-rw-rw-r--. 1 nwp nwp 120466 Sep 6 19:09 ocean_upwelling.in
-rw-rw-r--. 1 nwp nwp 1755 Aug 31 12:50 upwelling.h
-rw-rw-r--. 1 nwp nwp 147848 Aug 31 12:49 varinfo.dat

I do running serially , it is working without any error

./oceanG < ocean_upwelling.in
Model Input Parameters: ROMS/TOMS version 3.7
Sunday - September 6, 2015 - 8:05:04 PM
-----------------------------------------------------------------------------

Wind-Driven Upwelling/Downwelling over a Periodic Channel

Operating system : Linux
CPU/hardware : x86_64
Compiler system : gfortran
Compiler command : /opt/centos/devtoolset-1.1/root/usr/bin/gfortran
Compiler flags : -frepack-arrays -g -fbounds-check -ffree-form -ffree-line-length-none -ffree-form -ffree-line-length-none -ffree-form -ffree-line-length-none

SVN Root URL : https://www.myroms.org/svn/src/trunk
SVN Revision : 781M

Local Root : /home/nwp/ROMS
Header Dir : /home/nwp/Projects/upwelling
Header file : upwelling.h
Analytical Dir: /home/nwp/Projects/upwelling

Resolution, Grid 01: 0041x0080x016, Parallel Threads: 1, Tiling: 001x001


Physical Parameters, Grid: 01
=============================

1440 ntimes Number of timesteps for 3-D equations.
300.000 dt Timestep size (s) for 3-D equations.
30 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
T LcycleRST Switch to recycle time-records in restart file.
288 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
T ldefout Switch to create a new output NetCDF file(s).
72 nHIS Number of timesteps between the writing fields
into history file.
1 ntsAVG Starting timestep for the accumulation of output
time-averaged data.
72 nAVG Number of timesteps between the writing of
time-averaged data into averages file.
1 ntsDIA Starting timestep for the accumulation of output
time-averaged diagnostics data.
72 nDIA Number of timesteps between the writing of
time-averaged data into diagnostics file.
0.0000E+00 nl_tnu2(01) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 01: temp
0.0000E+00 nl_tnu2(02) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 02: salt
5.0000E+00 nl_visc2 NLM Horizontal, harmonic mixing coefficient
(m2/s) for momentum.
F LuvSponge Turning OFF sponge on horizontal momentum.
F LtracerSponge(01) Turning OFF sponge on tracer 01: temp
F LtracerSponge(02) Turning OFF sponge on tracer 02: salt
1.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
1.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
1.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
3.0000E-04 rdrg Linear bottom drag coefficient (m/s).
3.0000E-03 rdrg2 Quadratic bottom drag coefficient.
2.0000E-02 Zob Bottom roughness (m).
2 Vtransform S-coordinate transformation equation.
4 Vstretching S-coordinate stretching function.
3.0000E+00 theta_s S-coordinate surface control parameter.
0.0000E+00 theta_b S-coordinate bottom control parameter.
25.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
0.000 dstart Time-stamp assigned to model initialization (days).
0.00 time_ref Reference time for units attribute (yyyymmdd.dd)
0.0000E+00 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
0.0000E+00 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
0.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
F VolCons(1) NLM western edge boundary volume conservation.
F VolCons(2) NLM southern edge boundary volume conservation.
F VolCons(3) NLM eastern edge boundary volume conservation.
F VolCons(4) NLM northern edge boundary volume conservation.
14.000 T0 Background potential temperature (C) constant.
35.000 S0 Background salinity (PSU) constant.
1027.000 R0 Background density (kg/m3) used in linear Equation
of State.
1.7000E-04 Tcoef Thermal expansion coefficient (1/Celsius).
0.0000E+00 Scoef Saline contraction coefficient (1/PSU).
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
F LuvSrc Turning OFF momentum point Sources/Sinks.
F LwSrc Turning OFF volume influx point Sources/Sinks.
F LtracerSrc(01) Turning OFF point Sources/Sinks on tracer 01: temp
F LtracerSrc(02) Turning OFF point Sources/Sinks on tracer 02: salt
F LsshCLM Turning OFF processing of SSH climatology.
F Lm2CLM Turning OFF processing of 2D momentum climatology.
F Lm3CLM Turning OFF processing of 3D momentum climatology.
F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp
F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt
F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology.
F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology.
F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp
F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
T Hout(idOvel) Write out omega vertical velocity.
T Hout(idTvar) Write out tracer 01: temp
T Hout(idTvar) Write out tracer 02: salt

T Aout(idFsur) Write out averaged free-surface.
T Aout(idUbar) Write out averaged 2D U-momentum component.
T Aout(idVbar) Write out averaged 2D V-momentum component.
T Aout(idUvel) Write out averaged 3D U-momentum component.
T Aout(idVvel) Write out averaged 3D V-momentum component.
T Aout(idWvel) Write out averaged W-momentum component.
T Aout(idOvel) Write out averaged omega vertical velocity.
T Aout(idTvar) Write out averaged tracer 01: temp
T Aout(idTvar) Write out averaged tracer 02: salt

T Dout(M2rate) Write out 2D momentum acceleration.
T Dout(M2pgrd) Write out 2D momentum pressure gradient.
T Dout(M2fcor) Write out 2D momentum Coriolis force.
T Dout(M2hadv) Write out 2D momentum horizontal advection.
T Dout(M2xadv) Write out 2D momentum horizontal X-advection.
T Dout(M2yadv) Write out 2D momentum horizontal Y-advection.
T Dout(M2hvis) Write out 2D momentum horizontal viscosity.
T Dout(M2xvis) Write out 2D momentum horizontal X-viscosity.
T Dout(M2yvis) Write out 2D momentum horizontal Y-viscosity.
T Dout(M2sstr) Write out 2D momentum surface stress.
T Dout(M2bstr) Write out 2D momentum bottom stress.

T Dout(M3rate) Write out 3D momentum acceleration.
T Dout(M3pgrd) Write out 3D momentum pressure gradient.
T Dout(M3fcor) Write out 3D momentum Coriolis force.
T Dout(M3hadv) Write out 3D momentum horizontal advection.
T Dout(M3xadv) Write out 3D momentum horizontal X-advection.
T Dout(M3yadv) Write out 3D momentum horizontal Y-advection.
T Dout(M3vadv) Write out 3D momentum vertical advection.
T Dout(M3hvis) Write out 3D momentum horizontal viscosity.
T Dout(M3xvis) Write out 3D momentum horizontal X-viscosity.
T Dout(M3yvis) Write out 3D momentum horizontal Y-viscosity.
T Dout(M3vvis) Write out 3D momentum vertical viscosity.

T Dout(iTrate) Write out rate of change of tracer 01: temp
T Dout(iTrate) Write out rate of change of tracer 02: salt
T Dout(iThadv) Write out horizontal advection, tracer 01: temp
T Dout(iThadv) Write out horizontal advection, tracer 02: salt
T Dout(iTxadv) Write out horizontal X-advection, tracer 01: temp
T Dout(iTxadv) Write out horizontal X-advection, tracer 02: salt
T Dout(iTyadv) Write out horizontal Y-advection, tracer 01: temp
T Dout(iTyadv) Write out horizontal Y-advection, tracer 02: salt
T Dout(iTvadv) Write out vertical advection, tracer 01: temp
T Dout(iTvadv) Write out vertical advection, tracer 02: salt
T Dout(iThdif) Write out horizontal diffusion, tracer 01: temp
T Dout(iThdif) Write out horizontal diffusion, tracer 02: salt
T Dout(iTxdif) Write out horizontal X-diffusion, tracer 01: temp
T Dout(iTxdif) Write out horizontal X-diffusion, tracer 02: salt
T Dout(iTydif) Write out horizontal Y-diffusion , tracer 01: temp
T Dout(iTydif) Write out horizontal Y-diffusion , tracer 02: salt
T Dout(iTvdif) Write out vertical diffusion, tracer 01: temp
T Dout(iTvdif) Write out vertical diffusion, tracer 02: salt

Output/Input Files:

Output Restart File: ocean_rst.nc
Output History File: ocean_his.nc
Output Averages File: ocean_avg.nc
Output Diagnostics File: ocean_dia.nc

Tile partition information for Grid 01: 0041x0080x0016 tiling: 001x001

tile Istr Iend Jstr Jend Npts

0 1 41 1 80 52480

Tile minimum and maximum fractional coordinates for Grid 01:
(interior points only)

tile Xmin Xmax Ymin Ymax grid

0 -1.50 42.50 0.50 81.50 RHO-points

0 -2.00 42.00 0.50 81.50 U-points

0 -1.50 42.50 0.00 81.00 V-points

Lateral Boundary Conditions: NLM
============================

Variable Grid West Edge South Edge East Edge North Edge
--------- ---- ---------- ---------- ---------- ----------

zeta 1 Periodic Closed Periodic Closed

ubar 1 Periodic Closed Periodic Closed

vbar 1 Periodic Closed Periodic Closed

u 1 Periodic Closed Periodic Closed

v 1 Periodic Closed Periodic Closed

temp 1 Periodic Closed Periodic Closed

salt 1 Periodic Closed Periodic Closed

Activated C-preprocessing Options:

UPWELLING Wind-Driven Upwelling/Downwelling over a Periodic Channel
ANA_BSFLUX Analytical kinematic bottom salinity flux.
ANA_BTFLUX Analytical kinematic bottom temperature flux.
ANA_GRID Analytical grid set-up.
ANA_INITIAL Analytical initial conditions.
ANA_SMFLUX Analytical kinematic surface momentum flux.
ANA_SSFLUX Analytical kinematic surface salinity flux.
ANA_STFLUX Analytical kinematic surface temperature flux.
ANA_VMIX Analytical vertical mixing coefficients.
ASSUMED_SHAPE Using assumed-shape arrays.
AVERAGES Writing out time-averaged nonlinear model fields.
DIAGNOSTICS_TS Computing and writing tracer diagnostic terms.
DIAGNOSTICS_UV Computing and writing momentum diagnostic terms.
DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002).
DOUBLE_PRECISION Double precision arithmetic.
MIX_S_TS Mixing of tracers along constant S-surfaces.
MIX_S_UV Mixing of momentum along constant S-surfaces.
NONLINEAR Nonlinear Model.
!NONLIN_EOS Linear Equation of State for seawater.
POWER_LAW Power-law shape time-averaging barotropic filter.
PROFILE Time profiling activated .
!RST_SINGLE Double precision fields in restart NetCDF file.
SALINITY Using salinity.
SOLVE3D Solving 3D Primitive Equations.
SPLINES_VDIFF Parabolic Spline Reconstruction for Vertical Diffusion.
SPLINES_VVISC Parabolic Spline Reconstruction for Vertical Viscosity.
TS_U3HADVECTION Third-order upstream horizontal advection of tracers.
TS_C4VADVECTION Fourth-order centered vertical advection of tracers.
TS_DIF2 Harmonic mixing of tracers.
UV_ADV Advection of momentum.
UV_COR Coriolis term.
UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum.
UV_C4VADVECTION Fourth-order centered vertical advection of momentum.
UV_LDRAG Linear bottom stress.
UV_VIS2 Harmonic mixing of momentum.
VAR_RHO_2D Variable density barotropic mode.

Process Information:

Thread # 0 (pid= 21462) is active.

INITIAL: Configuring and initializing forward nonlinear model ...
*******

Vertical S-coordinate System, Grid 01:

level S-coord Cs-curve Z at hmin at hc half way at hmax

16 0.0000000 0.0000000 0.000 0.000 0.000 0.000
15 -0.0625000 -0.0019442 -0.809 -0.806 -1.348 -1.589
14 -0.1250000 -0.0078455 -1.668 -1.661 -2.966 -3.687
13 -0.1875000 -0.0179119 -2.580 -2.568 -4.867 -6.321
12 -0.2500000 -0.0324983 -3.549 -3.531 -7.077 -9.535
11 -0.3125000 -0.0521190 -4.581 -4.558 -9.630 -13.397
10 -0.3750000 -0.0774659 -5.686 -5.656 -12.573 -17.996
9 -0.4375000 -0.1094327 -6.875 -6.837 -15.967 -23.445
8 -0.5000000 -0.1491465 -8.162 -8.114 -19.889 -29.890
7 -0.5625000 -0.1980075 -9.564 -9.506 -24.435 -37.512
6 -0.6250000 -0.2577387 -11.104 -11.034 -29.721 -46.531
5 -0.6875000 -0.3304460 -12.808 -12.724 -35.892 -57.218
4 -0.7500000 -0.4186931 -14.709 -14.609 -43.121 -69.903
3 -0.8125000 -0.5255915 -16.846 -16.726 -51.622 -84.987
2 -0.8750000 -0.6549105 -19.266 -19.124 -61.651 -102.953
1 -0.9375000 -0.8112096 -22.028 -21.859 -73.518 -124.388
0 -1.0000000 -1.0000000 -25.200 -25.000 -87.600 -150.000

Time Splitting Weights for Grid 01: ndtfast = 30 nfast = 42
==================================

Primary Secondary Accumulated to Current Step

1-0.0008094437383769 0.0333333333333333-0.0008094437383769 0.0333333333333333
2-0.0014053566728197 0.0333603147912792-0.0022148004111966 0.0666936481246126
3-0.0017877524645903 0.0334071600137066-0.0040025528757869 0.1001008081383191
4-0.0019566842408176 0.0334667517625262-0.0059592371166046 0.1335675599008453
5-0.0019122901320372 0.0335319745705535-0.0078715272486418 0.1670995344713988
6-0.0016548570247459 0.0335957175749547-0.0095263842733877 0.2006952520463536
7-0.0011849025289723 0.0336508794757796-0.0107112868023600 0.2343461315221331
8-0.0005032751608631 0.0336903762267453-0.0112145619632232 0.2680365077488784
9 0.0003887272597151 0.0337071520654408-0.0108258347035081 0.3017436598143192
10 0.0014892209965583 0.0336941944901169-0.0093366137069498 0.3354378543044362
11 0.0027955815694920 0.0336445537902317-0.0065410321374578 0.3690824080946679
12 0.0043042707117221 0.0335513677379153-0.0022367614257356 0.4026337758325831
13 0.0060106451121704 0.0334078920475245 0.0037738836864348 0.4360416678801076
14 0.0079087469427945 0.0332075372104522 0.0116826306292293 0.4692492050905598
15 0.0099910761708920 0.0329439123123590 0.0216737068001213 0.5021931174029188
16 0.0122483446563884 0.0326108764399960 0.0339220514565097 0.5348039938429148
17 0.0146692120341107 0.0322025982847830 0.0485912634906204 0.5670065921276978
18 0.0172400033810439 0.0317136245503127 0.0658312668716643 0.5987202166780105
19 0.0199444086685725 0.0311389577709445 0.0857756755402368 0.6298591744489550
20 0.0227631639997064 0.0304741441486588 0.1085388395399432 0.6603333185976138
21 0.0256737146312911 0.0297153720153352 0.1342125541712342 0.6900486906129490
22 0.0286498597812016 0.0288595815276255 0.1628624139524359 0.7189082721405746
23 0.0316613792205220 0.0279045862015855 0.1945237931729578 0.7468128583421600
24 0.0346736416507075 0.0268492068942347 0.2291974348236653 0.7736620652363948
25 0.0376471948657328 0.0256934188392112 0.2668446296893981 0.7993554840756060
26 0.0405373376992232 0.0244385123436867 0.3073819673886213 0.8237939964192927
27 0.0432936737565710 0.0230872677537126 0.3506756411451924 0.8468812641730054
28 0.0458596469320356 0.0216441452951603 0.3965352880772280 0.8685254094681656
29 0.0481720587108284 0.0201154903974257 0.4447073467880565 0.8886408998655914
30 0.0501605672561820 0.0185097551070648 0.4948679140442384 0.9071506549726561
31 0.0517471682814030 0.0168377361985254 0.5466150823256415 0.9239883911711815
32 0.0528456577069106 0.0151128305891453 0.5994607400325521 0.9391012217603267
33 0.0533610761022577 0.0133513086655816 0.6528218161348098 0.9524525304259084
34 0.0531891349131379 0.0115726061288397 0.7060109510479478 0.9640251365547481
35 0.0522156244733761 0.0097996349650684 0.7582265755213239 0.9738247715198165
36 0.0503158038019030 0.0080591141492892 0.8085423793232269 0.9818838856691057
37 0.0473537721847153 0.0063819206892258 0.8558961515079423 0.9882658063583315
38 0.0431818225418188 0.0048034616164019 0.8990779740497611 0.9930692679747334
39 0.0376397765791564 0.0033640675316746 0.9367177506289175 0.9964333355064080
40 0.0305543017255206 0.0021094083123694 0.9672720523544381 0.9985427438187774
41 0.0217382098544504 0.0010909315881854 0.9890102622088885 0.9996336754069628
42 0.0109897377911118 0.0003663245930371 1.0000000000000004 0.9999999999999999

ndtfast, nfast = 30 42 nfast/ndtfast = 1.40000

Centers of gravity and integrals (values must be 1, 1, approx 1/2, 1, 1):

1.000000000000 1.047601458608 0.523800729304 1.000000000000 1.000000000000

Power filter parameters, Fgamma, gamma = 0.28400 0.18933

Metrics information for Grid 01:
===============================

Minimum X-grid spacing, DXmin = 1.00000000E+00 km
Maximum X-grid spacing, DXmax = 1.00000000E+00 km
Minimum Y-grid spacing, DYmin = 1.00000000E+00 km
Maximum Y-grid spacing, DYmax = 1.00000000E+00 km
Minimum Z-grid spacing, DZmin = 8.08965824E-01 m
Maximum Z-grid spacing, DZmax = 2.56123321E+01 m

Minimum barotropic Courant Number = 2.22358627E-01
Maximum barotropic Courant Number = 5.42494240E-01
Maximum Coriolis Courant Number = 2.47800000E-02


Basin information for Grid 01:

Maximum grid stiffness ratios: rx0 = 6.931666E-02 (Beckmann and Haidvogel)
rx1 = 8.661243E-01 (Haney)

Initial basin volumes: TotVolume = 3.8843755884E+11 m3
MinVolume = 8.4521383562E+05 m3
MaxVolume = 2.5612332106E+07 m3
Max/Min = 3.0302783777E+01

NL ROMS/TOMS: started time-stepping: (Grid: 01 TimeSteps: 00000001 - 00001440)


STEP Day HH:MM:SS KINETIC_ENRG POTEN_ENRG TOTAL_ENRG NET_VOLUME
C => (i,j,k) Cu Cv Cw Max Speed

0 0 00:00:00 0.000000E+00 6.585677E+02 6.585677E+02 3.884376E+11
(00,00,00) 0.000000E+00 0.000000E+00 0.000000E+00 0.000000E+00
DEF_HIS - creating history file, Grid 01: ocean_his.nc
WRT_HIS - wrote history fields (Index=1,1) into time record = 0000001
DEF_AVG - creating average file, Grid 01: ocean_avg.nc
DEF_DIAGS - creating diagnostics file, Grid 01: ocean_dia.nc
1 0 00:05:00 6.479408E-13 6.585677E+02 6.585677E+02 3.884376E+11
(01,01,01) 1.069435E-09 1.950204E-06 0.000000E+00 9.216783E-06
2 0 00:10:00 9.293195E-12 6.585677E+02 6.585677E+02 3.884376E+11
(01,02,08) 6.735167E-08 1.785829E-06 1.433648E-05 3.660353E-05
3 0 00:15:00 5.920054E-11 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 2.683559E-05 3.877254E-06 5.445482E-06 9.271767E-05
4 0 00:20:00 2.032841E-10 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 4.853368E-05 5.470837E-06 4.075080E-06 1.661160E-04
5 0 00:25:00 5.085264E-10 6.585677E+02 6.585677E+02 3.884376E+11
(01,80,16) 7.514633E-05 6.587518E-06 5.217479E-06 2.538854E-04
6 0 00:30:00 1.053310E-09 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 1.041251E-04 9.436421E-06 6.285301E-06 3.542437E-04
7 0 00:35:00 1.926036E-09 6.585677E+02 6.585677E+02 3.884376E+11
(01,80,16) 1.382410E-04 9.784043E-06 8.138427E-06 4.659668E-04
8 0 00:40:00 3.224086E-09 6.585677E+02 6.585677E+02 3.884376E+11
(01,80,16) 1.745639E-04 1.160885E-05 9.976061E-06 5.881342E-04
9 0 00:45:00 5.052880E-09 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 2.121586E-04 1.777350E-05 1.134555E-05 7.199854E-04
10 0 00:50:00 7.525184E-09 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 2.537663E-04 2.121363E-05 1.332259E-05 8.609275E-04
11 0 00:55:00 1.076070E-08 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 2.978929E-04 2.490702E-05 1.526933E-05 1.010450E-03
12 0 01:00:00 1.488563E-08 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 3.444098E-04 2.890984E-05 1.509582E-05 1.168121E-03
13 0 01:05:00 2.003219E-08 6.585677E+02 6.585677E+02 3.884376E+11
(01,79,16) 3.932021E-04 3.336464E-05 1.376979E-05 1.333570E-03
^C
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