problem in test case of upwelling

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xinwang
Posts: 11
Joined: Wed May 30, 2012 4:53 pm
Location: NOAA/AOML

problem in test case of upwelling

#1 Unread post by xinwang »

hello, every one.

I am fresh man using ROMS, and met a problem.

I have installed ROMS in gaea, a system of noaa. The build.sh is changed as the tutorial(using netcdf-pgi-3.6.2). When running build.sh, there is an error. The following is the displaying after running build.sh. Thanks for your help.

rm -f -r core *.ipo /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build /ncrc/home2/Xin.Wang/make_macros.mk
makefile:238: INCLUDING FILE /ncrc/home2/Xin.Wang/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
which: no ifort in (/sw/xe6/globus/globus-5.2.1/bin:/sw/xe6/globus/globus-5.2.1/sbin:/opt/torque/default/bin:/opt/moab/default/bin:/opt/modules/3.2.6.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin)
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/netcdf.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/typesizes.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I Master -I Compilers --silent --moddir /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/output.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Functionals/analytical.F ROMS/Utility/abort.F ROMS/Utility/array_modes.F ROMS/Utility/back_cost.F ROMS/Utility/cgradient.F ROMS/Utility/checkadj.F ROMS/Utility/checkdefs.F ROMS/Utility/checkerror.F ROMS/Utility/checkvars.F ROMS/Utility/close_io.F ROMS/Utility/congrad.F ROMS/Utility/convolve.F ROMS/Utility/cost_grad.F ROMS/Utility/def_avg.F ROMS/Utility/def_diags.F ROMS/Utility/def_dim.F ROMS/Utility/def_error.F ROMS/Utility/def_floats.F ROMS/Utility/def_gst.F ROMS/Utility/def_hessian.F ROMS/Utility/def_his.F ROMS/Utility/def_impulse.F ROMS/Utility/def_info.F ROMS/Utility/def_ini.F ROMS/Utility/def_lanczos.F ROMS/Utility/def_mod.F ROMS/Utility/def_norm.F ROMS/Utility/def_rst.F ROMS/Utility/def_station.F ROMS/Utility/def_tides.F ROMS/Utility/def_var.F ROMS/Utility/distribute.F ROMS/Utility/dotproduct.F ROMS/Utility/erf.F ROMS/Utility/extract_obs.F ROMS/Utility/extract_sta.F ROMS/Utility/frc_weak.F ROMS/Utility/gasdev.F ROMS/Utility/get_2dfld.F ROMS/Utility/get_2dfldr.F ROMS/Utility/get_3dfld.F ROMS/Utility/get_3dfldr.F ROMS/Utility/get_bounds.F ROMS/Utility/get_cycle.F ROMS/Utility/get_date.F ROMS/Utility/get_grid.F ROMS/Utility/get_gst.F ROMS/Utility/get_ngfld.F ROMS/Utility/get_ngfldr.F ROMS/Utility/get_state.F ROMS/Utility/get_varcoords.F ROMS/Utility/grid_coords.F ROMS/Utility/ini_adjust.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/ini_lanczos.F ROMS/Utility/inp_par.F ROMS/Utility/inquire.F ROMS/Utility/interpolate.F ROMS/Utility/lbc.F ROMS/Utility/lubksb.F ROMS/Utility/ludcmp.F ROMS/Utility/metrics.F ROMS/Utility/mp_exchange.F ROMS/Utility/mp_routines.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/nf_fread2d.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/nf_fread3d.F ROMS/Utility/nf_fread4d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/normalization.F ROMS/Utility/nrutil.F ROMS/Utility/obs_cost.F ROMS/Utility/obs_depth.F ROMS/Utility/obs_initial.F ROMS/Utility/obs_read.F ROMS/Utility/obs_write.F ROMS/Utility/packing.F ROMS/Utility/posterior.F ROMS/Utility/posterior_var.F ROMS/Utility/ran1.F ROMS/Utility/random_ic.F ROMS/Utility/ran_state.F ROMS/Utility/read_asspar.F ROMS/Utility/read_biopar.F ROMS/Utility/read_couplepar.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/read_fltpar.F ROMS/Utility/read_phypar.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_stapar.F ROMS/Utility/regrid.F ROMS/Utility/rep_matrix.F ROMS/Utility/set_2dfld.F ROMS/Utility/set_2dfldr.F ROMS/Utility/set_3dfld.F ROMS/Utility/set_3dfldr.F ROMS/Utility/set_diags.F ROMS/Utility/set_masks.F ROMS/Utility/set_ngfld.F ROMS/Utility/set_ngfldr.F ROMS/Utility/set_scoord.F ROMS/Utility/set_weights.F ROMS/Utility/shapiro.F ROMS/Utility/sqlq.F ROMS/Utility/state_addition.F ROMS/Utility/state_copy.F ROMS/Utility/state_dotprod.F ROMS/Utility/state_initialize.F ROMS/Utility/state_product.F ROMS/Utility/state_scale.F ROMS/Utility/stats_modobs.F ROMS/Utility/stiffness.F ROMS/Utility/strings.F ROMS/Utility/sum_grad.F ROMS/Utility/timers.F ROMS/Utility/uv_rotate.F ROMS/Utility/vorticity.F ROMS/Utility/white_noise.F ROMS/Utility/wpoints.F ROMS/Utility/wrt_avg.F ROMS/Utility/wrt_diags.F ROMS/Utility/wrt_error.F ROMS/Utility/wrt_floats.F ROMS/Utility/wrt_gst.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_his.F ROMS/Utility/wrt_impulse.F ROMS/Utility/wrt_info.F ROMS/Utility/wrt_ini.F ROMS/Utility/wrt_rst.F ROMS/Utility/wrt_station.F ROMS/Utility/wrt_tides.F ROMS/Utility/zeta_balance.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_average.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_mixing.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_param.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_tides.F Master/esmf_roms.F Master/master.F Master/ocean_control.F Master/ocean_coupler.F Master/propagator.F Master/roms_export.F Master/roms_import.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/MakeDepend
cp -p /ncrc/home2/Xin.Wang/make_macros.mk /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
makefile:234: INCLUDING FILE /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
which: no ifort in (/sw/xe6/globus/globus-5.2.1/bin:/sw/xe6/globus/globus-5.2.1/sbin:/opt/torque/default/bin:/opt/moab/default/bin:/opt/modules/3.2.6.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin)
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/abort.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' Master/ocean_control.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Functionals/analytical.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/distribute.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_iounits.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_param.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_kinds.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_kinds.f90
/bin/sh: -c: command not found
make: *** [/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.o] Error 127

l_fr
Posts: 9
Joined: Sun Oct 02, 2011 11:52 am
Location: Université de Liège

Re: problem in test case of upwelling

#2 Unread post by l_fr »

Well it seems that the compiler is ill-defined. At this place:
; -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_kinds.f90
There should be the compiler (ifort, gfortran, pgi) before the -c. Check in your build.bash script that the compiler is well defined.

Cheers,

François

xinwang
Posts: 11
Joined: Wed May 30, 2012 4:53 pm
Location: NOAA/AOML

Re: problem in test case of upwelling

#3 Unread post by xinwang »

Thanks to François for your suggestion. I will check the compiler.

User avatar
kate
Posts: 4091
Joined: Wed Jul 02, 2003 5:29 pm
Location: CFOS/UAF, USA

Re: problem in test case of upwelling

#4 Unread post by kate »

Code: Select all

which: no ifort in (/sw/xe6/globus/globus-5.2.1/bin:/sw/xe6/globus/globus-5.2.1/sbin:/opt/torque/default/bin:/opt/moab/default/bin:/opt/modules/3.2.6.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin)
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/netcdf.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
It is looking for ifort, which it would have gotten from the FORT variable. On the other hand, you are copying over the pgi netcdf module files. This has to be consistent - use the module files built by the compiler you use to build ROMS.

xinwang
Posts: 11
Joined: Wed May 30, 2012 4:53 pm
Location: NOAA/AOML

Re: problem in test case of upwelling

#5 Unread post by xinwang »

Thank you, Kate.
I input the following commands: "module load intel/12.0.5.220" and "module load netcdf/3.6.2a" . But there is still an error listing in the following. I have no idea how use the module files built to build ROMS. Am I wrong in setting netcdf? Can you tell me more details? Many thanks!

roms_projects/upwelling> ./build.sh
rm -f -r core *.ipo /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build /ncrc/home2/Xin.Wang/make_macros.mk
makefile:238: INCLUDING FILE /ncrc/home2/Xin.Wang/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/netcdf.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/typesizes.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I Master -I Compilers --silent --moddir /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/output.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Functionals/analytical.F ROMS/Utility/abort.F ROMS/Utility/array_modes.F ROMS/Utility/back_cost.F ROMS/Utility/cgradient.F ROMS/Utility/checkadj.F ROMS/Utility/checkdefs.F ROMS/Utility/checkerror.F ROMS/Utility/checkvars.F ROMS/Utility/close_io.F ROMS/Utility/congrad.F ROMS/Utility/convolve.F ROMS/Utility/cost_grad.F ROMS/Utility/def_avg.F ROMS/Utility/def_diags.F ROMS/Utility/def_dim.F ROMS/Utility/def_error.F ROMS/Utility/def_floats.F ROMS/Utility/def_gst.F ROMS/Utility/def_hessian.F ROMS/Utility/def_his.F ROMS/Utility/def_impulse.F ROMS/Utility/def_info.F ROMS/Utility/def_ini.F ROMS/Utility/def_lanczos.F ROMS/Utility/def_mod.F ROMS/Utility/def_norm.F ROMS/Utility/def_rst.F ROMS/Utility/def_station.F ROMS/Utility/def_tides.F ROMS/Utility/def_var.F ROMS/Utility/distribute.F ROMS/Utility/dotproduct.F ROMS/Utility/erf.F ROMS/Utility/extract_obs.F ROMS/Utility/extract_sta.F ROMS/Utility/frc_weak.F ROMS/Utility/gasdev.F ROMS/Utility/get_2dfld.F ROMS/Utility/get_2dfldr.F ROMS/Utility/get_3dfld.F ROMS/Utility/get_3dfldr.F ROMS/Utility/get_bounds.F ROMS/Utility/get_cycle.F ROMS/Utility/get_date.F ROMS/Utility/get_grid.F ROMS/Utility/get_gst.F ROMS/Utility/get_ngfld.F ROMS/Utility/get_ngfldr.F ROMS/Utility/get_state.F ROMS/Utility/get_varcoords.F ROMS/Utility/grid_coords.F ROMS/Utility/ini_adjust.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/ini_lanczos.F ROMS/Utility/inp_par.F ROMS/Utility/inquire.F ROMS/Utility/interpolate.F ROMS/Utility/lbc.F ROMS/Utility/lubksb.F ROMS/Utility/ludcmp.F ROMS/Utility/metrics.F ROMS/Utility/mp_exchange.F ROMS/Utility/mp_routines.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/nf_fread2d.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/nf_fread3d.F ROMS/Utility/nf_fread4d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/normalization.F ROMS/Utility/nrutil.F ROMS/Utility/obs_cost.F ROMS/Utility/obs_depth.F ROMS/Utility/obs_initial.F ROMS/Utility/obs_read.F ROMS/Utility/obs_write.F ROMS/Utility/packing.F ROMS/Utility/posterior.F ROMS/Utility/posterior_var.F ROMS/Utility/ran1.F ROMS/Utility/random_ic.F ROMS/Utility/ran_state.F ROMS/Utility/read_asspar.F ROMS/Utility/read_biopar.F ROMS/Utility/read_couplepar.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/read_fltpar.F ROMS/Utility/read_phypar.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_stapar.F ROMS/Utility/regrid.F ROMS/Utility/rep_matrix.F ROMS/Utility/set_2dfld.F ROMS/Utility/set_2dfldr.F ROMS/Utility/set_3dfld.F ROMS/Utility/set_3dfldr.F ROMS/Utility/set_diags.F ROMS/Utility/set_masks.F ROMS/Utility/set_ngfld.F ROMS/Utility/set_ngfldr.F ROMS/Utility/set_scoord.F ROMS/Utility/set_weights.F ROMS/Utility/shapiro.F ROMS/Utility/sqlq.F ROMS/Utility/state_addition.F ROMS/Utility/state_copy.F ROMS/Utility/state_dotprod.F ROMS/Utility/state_initialize.F ROMS/Utility/state_product.F ROMS/Utility/state_scale.F ROMS/Utility/stats_modobs.F ROMS/Utility/stiffness.F ROMS/Utility/strings.F ROMS/Utility/sum_grad.F ROMS/Utility/timers.F ROMS/Utility/uv_rotate.F ROMS/Utility/vorticity.F ROMS/Utility/white_noise.F ROMS/Utility/wpoints.F ROMS/Utility/wrt_avg.F ROMS/Utility/wrt_diags.F ROMS/Utility/wrt_error.F ROMS/Utility/wrt_floats.F ROMS/Utility/wrt_gst.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_his.F ROMS/Utility/wrt_impulse.F ROMS/Utility/wrt_info.F ROMS/Utility/wrt_ini.F ROMS/Utility/wrt_rst.F ROMS/Utility/wrt_station.F ROMS/Utility/wrt_tides.F ROMS/Utility/zeta_balance.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_average.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_mixing.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_param.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_tides.F Master/esmf_roms.F Master/master.F Master/ocean_control.F Master/ocean_coupler.F Master/propagator.F Master/roms_export.F Master/roms_import.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/MakeDepend
cp -p /ncrc/home2/Xin.Wang/make_macros.mk /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
makefile:234: INCLUDING FILE /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/abort.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' Master/ocean_control.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Functionals/analytical.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/distribute.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_iounits.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_param.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_kinds.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_kinds.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_param.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_iounits.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_ncparam.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ncparam.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ncparam.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_biology.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_biology.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_biology.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_scalars.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_scalars.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_scalars.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_scalars.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_biology.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_parallel.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_parallel.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_parallel.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -DMY_OS='"Linux"' -DMY_CPU='"x86_64"' -DMY_FORT='"ifort"' -DMY_FC='"/opt/intel/composerxe-2011.5.220/bin/intel64/ifort"' -DMY_FFLAGS='"-heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free -free"' ROMS/Modules/mod_strings.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_strings.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free -free mod_strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_parallel.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_sediment.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sediment.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sediment.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_sediment.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_ncparam.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free distribute.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/erf.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/erf.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/erf.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free erf.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Nonlinear/exchange_2d.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_2d.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_2d.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free exchange_2d.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Nonlinear/exchange_3d.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_3d.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_3d.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free exchange_3d.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_boundary.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_boundary.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_boundary.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_boundary.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_clima.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_clima.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_clima.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_clima.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_eclight.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_eclight.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_eclight.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_eclight.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_forces.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_forces.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_forces.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_forces.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_grid.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_grid.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_grid.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_grid.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_mixing.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_mixing.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_mixing.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_mixing.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_ocean.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ocean.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ocean.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_ocean.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_sedbed.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sedbed.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sedbed.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_sedbed.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_sources.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sources.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sources.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_netcdf.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_netcdf.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_netcdf.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/strings.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/strings.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_netcdf.f90
mod_netcdf.f90(19): error #7013: This module file was not generated by any release of this compiler. [NETCDF]
USE netcdf
----------^
mod_netcdf.f90(109): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_REAL]
integer, parameter :: NF_FOUT = nf90_real
--------------------------------------^
mod_netcdf.f90(110): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_DOUBLE]
integer, parameter :: NF_FRST = nf90_double
--------------------------------------^
mod_netcdf.f90(111): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_DOUBLE]
integer, parameter :: NF_TYPE = nf90_double
--------------------------------------^
mod_netcdf.f90(117): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_64BIT_OFFSET]
integer :: CMODE = nf90_64bit_offset ! NetCDF 64-bit offset format
-------------------------^
mod_netcdf.f90(117): error #6973: This is not a valid initialization expression. [NF90_64BIT_OFFSET]
integer :: CMODE = nf90_64bit_offset ! NetCDF 64-bit offset format
-------------------------^
mod_netcdf.f90(109): error #6404: This name does not have a type, and must have an explicit type. [NF90_REAL]
integer, parameter :: NF_FOUT = nf90_real
--------------------------------------^
mod_netcdf.f90(110): error #6404: This name does not have a type, and must have an explicit type. [NF90_DOUBLE]
integer, parameter :: NF_FRST = nf90_double
--------------------------------------^
mod_netcdf.f90(117): error #6404: This name does not have a type, and must have an explicit type. [NF90_64BIT_OFFSET]
integer :: CMODE = nf90_64bit_offset ! NetCDF 64-bit offset format
-------------------------^
mod_netcdf.f90(212): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE]
status=nf90_inquire(ncid, n_dim, n_var, n_gatt, rec_id)
---------------^
mod_netcdf.f90(214): error #6404: This name does not have a type, and must have an explicit type. [NF90_NOERR]
IF ((status.eq.nf90_noerr).and.(n_dim.le.Mdims)) THEN
-----------------------^
mod_netcdf.f90(221): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_DIMENSION]
status=nf90_inquire_dimension(ncid, dim_id(i), &
-------------------^
mod_netcdf.f90(706): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE]
status=nf90_inquire(my_ncid, n_dim, n_var, n_gatt, rec_id)
---------------^
mod_netcdf.f90(715): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_VARIABLE]
status=nf90_inquire_variable(my_ncid, var_id(i), &
-------------------^
mod_netcdf.f90(721): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQ_ATTNAME]
status=nf90_inq_attname(my_ncid, var_id(i), j, &
-----------------------^
mod_netcdf.f90(809): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_DIMENSION]
status=nf90_inquire_dimension(my_ncid, var_Dids(i), &
---------------------^
mod_netcdf.f90(825): error #6632: Keyword arguments are invalid without an explicit interface. [XTYPE]
& xtype = my_Atype, &
------------------------------------------------^
mod_netcdf.f90(826): error #6632: Keyword arguments are invalid without an explicit interface. [LEN]
& len = my_Alen)
------------------------------------------------^
mod_netcdf.f90(823): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_ATTRIBUTE]
status=nf90_inquire_attribute(my_ncid, my_id, &
-------------------------^
mod_netcdf.f90(829): error #6404: This name does not have a type, and must have an explicit type. [NF90_INT]
& (my_Atype.eq.NF90_INT)) THEN
-------------------------------------^
mod_netcdf.f90(830): error #6404: This name does not have a type, and must have an explicit type. [NF90_GET_ATT]
status=nf90_get_att(my_ncid, my_id, &
-----------------------------^
mod_netcdf.f90(844): error #6404: This name does not have a type, and must have an explicit type. [NF90_FLOAT]
& ((my_Atype.eq.NF90_FLOAT ).or. &
-------------------------------------------^
mod_netcdf.f90(859): error #6404: This name does not have a type, and must have an explicit type. [NF90_CHAR]
ELSE IF (my_Atype.eq.NF90_CHAR) THEN
-----------------------------------------^
mod_netcdf.f90(982): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQ_VARID]
status=nf90_inq_varid(ncid, TRIM(myVarName), VarID)
---------------^
mod_netcdf.f90(1066): error #6632: Keyword arguments are invalid without an explicit interface. [NAME]
& name = my_Vname, &
-------------------------------------^
mod_netcdf.f90(1067): error #6632: Keyword arguments are invalid without an explicit interface. [NATTS]
& nAtts = my_natts)
-------------------------------------^
mod_netcdf.f90(1065): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_VARIABLE]
status=nf90_inquire_variable(my_ncid, varid, &
---------------^
mod_netcdf.f90(4515): catastrophic error: Too many errors, exiting
compilation aborted for mod_netcdf.f90 (code 1)
make: *** [/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_netcdf.o] Error 1

User avatar
kate
Posts: 4091
Joined: Wed Jul 02, 2003 5:29 pm
Location: CFOS/UAF, USA

Re: problem in test case of upwelling

#6 Unread post by kate »

Code: Select all

mod_netcdf.f90(19): error #7013: This module file was not generated by any release of this compiler. [NETCDF]
USE netcdf
----------^
If there is a pgi module on that system, loading it and setting FORT to pgi might be simplest. If you believe that ifort is a better compiler, you can ask the system guys if they have built NetCDF with it and stashed that in a different module. A third option is to compile NetCDF with ifort yourself and use that version.

xinwang
Posts: 11
Joined: Wed May 30, 2012 4:53 pm
Location: NOAA/AOML

Re: problem in test case of upwelling

#7 Unread post by xinwang »

Thanks to Kate for your kind and patient answers.
Now, ROMS can run successfully.

peigen
Posts: 5
Joined: Tue May 07, 2013 4:37 pm
Location: Xiamen University

Re: problem in test case of upwelling

#8 Unread post by peigen »

i have the same errors as yours. How can you solve it finally?

User avatar
kate
Posts: 4091
Joined: Wed Jul 02, 2003 5:29 pm
Location: CFOS/UAF, USA

Re: problem in test case of upwelling

#9 Unread post by kate »

Which errors? Are you getting this?
mod_netcdf.f90(19): error #7013: This module file was not generated by any release of this compiler. [NETCDF]
USE netcdf
You *must* use the same compiler (and same version) to build NetCDF and to build ROMS.

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